KEGG   Bifidobacterium pseudocatenulatum: BBPC_1603
Entry
BBPC_1603         CDS       T03932                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
bpsc  Bifidobacterium pseudocatenulatum
Pathway
bpsc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bpsc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BBPC_1603
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bpsc03021]
    BBPC_1603
   03019 Messenger RNA biogenesis [BR:bpsc03019]
    BBPC_1603
Transcription machinery [BR:bpsc03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     BBPC_1603
Messenger RNA biogenesis [BR:bpsc03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     BBPC_1603
SSDB
Motif
Pfam: ATP-synt_ab Rho_RNA_bind Rho_N SAP Spore_III_AA PIP5K NACHT
Other DBs
NCBI-ProteinID: BAR04281
Position
complement(1962154..1964304)
AA seq 716 aa
MATSPNLEDMKLPELKELAKQMGLRGTSTMRKPELIATLQAARSGGEAPAGVTVRAPKSA
APAAPVAPAEAQTADAEVAANTAEESGKSNEAAESKANEAEQSEKQTAKTVRKTLAGRAD
SAERAERSEQTERAERTERADRRKQAEAPTSEEAADVMAAVNALDSIDEAPKRRRRRDAD
AATDLLAELGLDDASPKQDDRRRHRKDDASDVEPRRRRRAVEGPKDEDVVRDLDDILATL
PSQGSDDDERRDEAEDGDFARRGRGRVSDRGDRVDRRGRRLRGRDRDYDERDERRGRTGD
RNNDRNERNDRVERNERTDRNVEREQRHEEPKEDLVPVAGIVDVLDSYAFVRTSGYLPGP
NDVYVSMGQVKKYGLRKGDAVHGSIRTPREGDRRNQRQKFVPLQSIDSINGMTVEAAQNR
PQFNKLTPLYPQERLKQETAPNKLTGRLIDIVAPIGKGQRGLIVSPPKAGKTITLQNIAN
AIATNNPEVHLMVVLVDERPEEVTDMERTVQGEVISSTFDRPASDHTTVAELAIERAKRL
VELGQDVVVLLDSMTRLARAYNIAAPASGRILSGGVDAQALYPPKKFFGAARNIENGGSL
TIISSALVETGSKMDEVIFEEFKGTGNMELRLSRELADKRLFPAIDVNASGTRREELITD
PQELPIIYRLRRLLGGLEPEQAYQTLVPRLKKTATNRDFMASLIQQSGNTANNGNS
NT seq 2151 nt   +upstreamnt  +downstreamnt
gtggcaaccagcccgaatcttgaagacatgaaactgcctgagctcaaggagctcgccaag
cagatgggccttcgtggcacctccaccatgcgtaagccggaacttatcgcgacgcttcag
gccgctcgttccggcggtgaagcgcctgccggtgtgaccgtgcgagctccgaagtccgct
gcaccggccgctccggtggctcctgctgaagcccaaaccgcagacgctgaggtcgcggcg
aacacggctgaggaatccggcaagtccaacgaggctgccgaaagcaaagccaacgaggct
gagcagtccgaaaagcagacggccaaaaccgttaggaagacccttgccggacgtgctgat
agcgctgagcgtgcggagcgctccgaacagacggaacgtgccgagcgcaccgagcgtgct
gaccgtcgcaagcaggctgaggctccgacgagcgaggaggcggccgatgtcatggccgcg
gtgaacgccctggacagcatcgatgaggctccgaagcgccgtcgccgccgtgatgcggac
gctgccaccgatctgctggccgaactgggattggacgatgcttcgccgaagcaggatgat
cgtcgtcgccatcgtaaggatgatgcgtccgacgttgagccgcgccgtcgccgtcgtgcg
gtggaagggccgaaggatgaggacgttgtgcgcgatcttgatgacattctcgccacgttg
ccttcgcagggcagtgatgatgacgaacgtcgtgacgaggctgaagacggtgatttcgcg
cgtcgtggtcgcggtcgcgtcagcgataggggtgaccgcgtggatcgtcgtggccgtcgc
ctgcgtggccgtgaccgcgattatgacgagcgtgacgagcgtcgtggccgtaccggcgac
cgtaacaatgatcgcaacgagcgtaacgatcgcgtcgagcgcaacgagcgcacggatcgc
aatgttgaacgcgaacagcgtcacgaggagccgaaagaggatctcgtgcctgtcgcgggc
atcgtcgacgtgctcgattcctacgctttcgtgcgtacctccggctatttgccgggtccg
aacgacgtgtacgtttccatgggccaggtcaagaagtatgggctgcgcaagggtgatgcc
gtgcacggttccatccgtaccccgcgtgagggcgaccgccgcaaccagcgtcagaagttc
gtgccgctgcagtccatcgactccatcaacggcatgaccgtggaggccgcacagaaccgt
ccgcagttcaacaagctcactccgctgtatccgcaggagcgtctgaagcaggaaaccgcg
ccgaacaagctcaccggccgcctcatcgacatcgtggcgccgatcggcaagggccagcgt
ggcctgatcgtgtctccgccgaaggccggcaagaccatcaccctgcagaacatcgccaac
gcgatcgccaccaacaatccggaagtccacctgatggtcgtgctcgtggacgaacgtccg
gaagaggtcaccgatatggaacgtacggtgcagggcgaggtcatttcctccaccttcgac
cgtccggcctccgaccacaccaccgtcgccgaactcgccatcgaacgcgcgaagcgtctc
gtggagcttggccaggacgtggtggtgctgcttgattccatgacccgtctggcccgtgcc
tacaacatcgccgctccggcttccggccgtattctttccggtggtgtggatgcccaggcg
ctgtacccaccgaagaagttcttcggtgccgctcgtaacatcgaaaacggcggctctctg
accatcatctcctccgcactggtggaaaccggctccaagatggacgaggtgattttcgag
gagttcaagggcaccggcaacatggagctgcgcctgagccgcgaactggcagacaagcgc
ctgttcccggccatcgacgtgaacgcttccggcacccgtcgcgaggaactcatcaccgat
ccgcaggagctgccgatcatctaccgtctgcgtcgtctgcttggcggtctggagcctgag
caggcttaccagacgcttgtgccgcgtctgaagaagaccgcgaccaaccgtgatttcatg
gcgtcgctgatccagcagagcggcaataccgcgaataacggcaacagctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (15)   

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