KEGG   Burkholderia pseudomultivorans: WS57_15615
Entry
WS57_15615        CDS       T04870                                 
Name
(GenBank) DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
bpsl  Burkholderia pseudomultivorans
Pathway
bpsl03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:bpsl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    WS57_15615
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bpsl03400]
    WS57_15615
Enzymes [BR:bpsl01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     WS57_15615
DNA repair and recombination proteins [BR:bpsl03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     WS57_15615
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Other DBs
NCBI-ProteinID: AOI90309
Position
1:632689..635355
AA seq 888 aa
MADKLEPYRRMRRFDATPEPEGAHGRRRAAAGARSKPPARGRQPLRYVIQEHHARRLHYD
FRLELDGTLKSWAVPKGPSVDPSVKRLAVHVEDHPLEYASFEGEIPAGHYGAGSVVVWDE
GTWVPDGGLAGARDGYRAGKLKFRLDGRKLHGGWALVRSGRQEGRQEQWLLIKERDDEAR
DAEGYDVVAQQPGSVHRRAASRPLAPSGIEGAVRAPLPERVAPQLATLVDAPPAHGDWRY
ELKFDGYRILARIAGKGARRHVTLMTREGRDWTAKLRPQRDALAALGVDDAWLDAEAVVL
GEHGLPDFQALQNALGAGRADAVTLFVFDLPYLDGYDLRDAPLTARRALLEPLLADCDPV
RLRFSPDLGDDVATLIANACDTGLEGLIGKRADARYRAGRSPAWIKLKCRRRQEFVIGGY
TEPSGARNGFGALLLGVHEPAPPGRKRRDAGPLRYVGRVGTGFDTRTLDRLAAILRAHER
DAAPFDPPPREWSRTRVHWVEPTLVAECEFAEWTGDGIVRQAAFIALRDDKPAAQIVREV
ARHTATEATMDERNTTDGARDGAQHDRDATRARTRRSTGAQSRAGTPRGEAAPDRVGRVR
ITHPERVVDPQHGTRKIDLAHYWEWVAPWLLPDLAGRPVSLVRAPEDITGELFFQKHADR
REIPYVARHAGLDPGHGPLLTIDSVDALVGAAQMGTVELHTWNAHVSNIERPDRIVFDLD
PDPALPWRAMIDAAQLVRGLLDELGLVSFCKTSGGKGLHVVVPITRHAGWDEVKDFSRAV
AQHVAAALPDRFTATMGPRNRRGKIFIDYLRNGRGASTIAAYSVRARPGMGVSVPIGWDE
VPDTTGGAQWTIDTLHERLEHLARDPWEDYAGTRQRITARMRARLATS
NT seq 2667 nt   +upstreamnt  +downstreamnt
atggccgacaagctcgaaccctatcgccggatgcgccgcttcgacgcgacgccggagccc
gaaggcgcgcacggccggcgccgcgcggcagccggcgcgcggtcgaagccgcccgcgcgc
ggccggcagccgttgcgctatgtgatccaggaacatcacgcgcgccgcctgcattacgac
ttccgtctcgaactcgacggcacgctgaagtcctgggcggtgccgaaagggcccagcgtc
gatccgtcggtgaagcgcctcgcggtgcatgtcgaggatcatccgctcgaatacgcgtcg
ttcgagggcgagatcccggccggccattacggcgccggttcggtcgtcgtctgggacgaa
ggcacgtgggtgccggacggcgggctggccggcgcacgcgacggctatcgtgcgggcaag
ctgaagttccggctcgacggccggaagctgcacggcggctgggcgctggtgcgcagcggc
cggcaggaagggcggcaggagcaatggctgctgatcaaggaacgcgacgacgaggcgcgc
gacgcggagggctacgacgtcgtcgcgcagcagccgggcagcgtgcatcggcgcgctgct
tcgcgcccgctcgcgccgtccggcatcgaaggcgcggtgcgcgcgccgctgcccgagcgc
gtcgcgccgcagctcgcgacgctggtcgacgcgccgcccgcgcatggcgactggcgctac
gaactgaagttcgacggctaccggatcctcgcgcgcatcgcgggcaagggcgcgcgacgg
cacgtgacgctgatgacgcgcgaagggcgcgactggaccgcgaagctgcggccgcagcgc
gacgcgctcgcggcgctcggcgtcgacgacgcgtggctcgacgccgaggccgtggtgctc
ggcgagcacgggctgcccgatttccaggcgctgcagaacgcgctcggcgcggggcgagcg
gatgccgtcacgctgttcgtgttcgacctgccctatctcgacggctacgacctgcgcgat
gcgccgctgaccgcgcgccgcgcgctgctcgaaccgctgctcgccgactgcgacccggtg
cggctgcgcttttcgcccgatctcggcgacgacgtcgcgacgctgatcgcgaacgcgtgc
gacacgggcctcgaaggcctgatcggcaagcgcgccgacgcgcgctatcgcgcggggcgc
tcgccggcgtggatcaagctgaaatgccggcgccggcaggaattcgtgatcggcggctat
accgagccgtcgggcgcccgcaatggtttcggcgcgctgctgctcggcgtgcacgagccg
gcgccgcccggcaggaagcgacgcgacgccgggccgctgcgctatgtcggccgcgtcggg
accggcttcgacacgcgcacgctcgaccggctggccgcgatcctgcgcgcgcacgaacgc
gacgcggcgccgttcgatccgccgccgcgcgagtggtcgcgcacgcgcgtgcactgggtc
gagccgacgctcgtcgccgaatgcgagttcgccgaatggaccggcgacggcatcgtgcgc
caggcagccttcatcgcgctgcgcgacgacaagccggcggcgcagatcgtcagggaggtt
gcacgacacaccgcaacggaggcaacgatggacgagcgcaacacgacggatggcgcgcgc
gacggcgcgcagcacgaccgtgacgcgacgcgcgcgcgaacccgacgcagcacgggggcg
cagtcgcgcgccggcacgccccgcggcgaggccgcgcccgatcgggtcggccgcgtgcgc
atcacccatcccgagcgtgtggtcgatccgcagcacggcacccgcaagatcgatctcgcg
cactactgggaatgggtcgcgccgtggctgctgcccgatctcgcggggcggccggtgtcg
ctggtgcgcgcgccggaggacatcaccggcgagctgttcttccagaagcatgcggatcgg
cgcgagattccgtacgtcgcgcggcatgccggcctcgatccgggtcacgggccgctgctg
acgatcgacagcgtcgacgcgctggtcggcgccgcgcagatgggtacggtcgagctgcat
acgtggaacgcgcacgtgtccaatatcgagcgcccggaccggatcgtgttcgacctcgat
cccgatcccgcgctgccgtggcgcgcgatgatcgacgccgcgcagctcgtgcgcggcctg
ctcgacgaactcgggctcgtgtcgttctgcaagacgagcggcggcaaggggctgcacgtg
gtcgtgccgatcacgcggcacgcgggctgggacgaggtgaaagacttctcgcgcgcagtc
gcgcagcatgtcgcggcggcgctgcccgaccgcttcaccgcgacgatggggccgcgcaac
cggcgcggcaagatcttcatcgactacctgcgcaacgggcgcggcgcgagcacgatcgcg
gcctactcggtgcgcgcacggcccggcatgggcgtgtcggtgccgatcggctgggacgag
gtgcccgacaccaccggcggcgcgcagtggacgatcgacacactgcacgaacgactcgaa
cacctcgcgcgcgatccgtgggaagactacgcgggcacgcggcagcggatcaccgcgcgc
atgcgtgcgcggctcgcgacgtcgtga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (20)   

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