KEGG T02294: RM11

Bartonella quintana RM-11: RM11_0225

Entry

RM11_0225 CDS T02294

Definition

formamidopyrimidine-DNA glycosylase

Orthology

K10563

formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]

Organism

bqr Bartonella quintana RM-11

Pathway

bqr03410

Base excision repair

Brite

KEGG Orthology (KO) [BR:bqr00001]
Genetic Information Processing
  Replication and repair
   03410 Base excision repair
    RM11_0225
Enzymes [BR:bqr01000]
3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     RM11_0225
4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     RM11_0225

SSDB

Motif

Pfam:

Fapy_DNA_glyco H2TH zf-FPG_IleRS DZR C1_3

Other DBs

NCBI-GI:

403530153

NCBI-GeneID:

13564351

UniProt:

K4HJK6

Position

297751..298626

AA seq 291 aa
MPELPEVETVRRGLEPFITGAKIISITLNRRDLRFPFPEAFSERLVGRTIMELGRRAKYL
LFHLSQNETILSHLGMSGSWRIEDDLLRKTYSAAGKFVKHDHFLMDIQAKDSKVYHLTYN
DVRRFGFMLLLDTNRLYEHPLLKKLGLEPLSNEFSGRYLQEAFVNKKISLKGVLLDQSII
AGLGNIYVCEALWRSRLSPQRGAFTLALKTVRAREFADSLAQNIRNVIAEAISFGGSTLR
DYIRTDGSLGYFQHSFSVYGREGKECFRCGTPITRISQSGRSSFYCSQCQK

NT seq 876 nt +upstreamnt +downstreamnt
atgcctgaactccctgaagtagaaacagttcgtcgtggacttgagccgtttataactggt
gcgaagattatatcaatcacgcttaatcgtagagatttacgatttcctttccctgaggcc
ttttctgagaggcttgtgggcagaacaattatggaacttggtcgacgcgcgaaatatttg
ttattccatctttcgcaaaatgaaacaattttgagccatttaggaatgtccggatcatgg
cgtatagaggatgatcttttaagaaaaacatattctgctgcagggaaatttgttaagcat
gatcactttctcatggatattcaagcaaaggatagcaaagtttatcatcttacttataat
gatgttcgtcgttttgggtttatgcttttactagatacaaacaggctttatgagcatccg
cttttaaagaaactagggctcgaacctctgagcaatgagttttctggtcgttatttacaa
gaagcttttgttaataaaaaaatatctcttaaaggagtcttacttgatcagtctattatt
gcaggtcttgggaatatttatgtttgcgaagcgctttggcgtagtcgcttgtctccacaa
cgtggagcattcaccttagcattgaagactgtacgtgcacgcgaatttgcagattcttta
gcgcagaatatacgcaatgtgattgctgaagcaatttcttttggtggatctactttacgg
gattatattcgtacagatggctcacttggttattttcaacactctttttcagtttatgga
cgagaaggcaaagaatgctttcgatgtggaacacctattacacgtatttcacagtctgga
cgttcaagcttttactgttcacagtgtcaaaaataa

All links

Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (17)   

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