KEGG   Brevundimonas sp. DS20: JL11_12265
Entry
JL11_12265        CDS       T04101                                 
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
brd  Brevundimonas sp. DS20
Pathway
brd02024  Quorum sensing
brd03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:brd00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    JL11_12265
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    JL11_12265
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:brd03019]
    JL11_12265
   03036 Chromosome and associated proteins [BR:brd03036]
    JL11_12265
Messenger RNA biogenesis [BR:brd03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     JL11_12265
Chromosome and associated proteins [BR:brd03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    JL11_12265
SSDB
Motif
Pfam: Hfq
Other DBs
NCBI-ProteinID: ALJ10113
UniProt: A0A0P0D985
Position
complement(2506500..2506745)
AA seq 81 aa
MSQDKRQNLQDTFLNSVRKTKTPLTIFLVNGVKLQGIVTWFDNFCVLLRRDGQSQLVYKH
AISTIMPSAPVQLYEPDAEDD
NT seq 246 nt   +upstreamnt  +downstreamnt
atgtcgcaagacaaacgccagaaccttcaggacaccttcctcaactcggtccgcaagacc
aagacgccgctgaccatcttcctggtcaatggggtcaagttgcagggaatcgtgacctgg
ttcgacaacttctgtgtgctgctgcgccgcgatggccagtcccagctggtgtacaagcac
gccatctccaccatcatgccgtccgcgcccgtgcagctgtacgagcccgacgccgaagac
gattga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (1)   
   Pfam (1)   
All databases (11)   

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