KEGG   Brassica rapa (field mustard): 103830729
Entry
103830729         CDS       T03449                                 
Name
(RefSeq) RNA polymerase II subunit A C-terminal domain phosphatase SSU72
  KO
K15544  RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16]
Organism
brp  Brassica rapa (field mustard)
Pathway
brp03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:brp00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    103830729
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:brp03021]
    103830729
   03019 Messenger RNA biogenesis [BR:brp03019]
    103830729
Enzymes [BR:brp01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.3  Phosphoric-monoester hydrolases
    3.1.3.16  protein-serine/threonine phosphatase
     103830729
Transcription machinery [BR:brp03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     103830729
Messenger RNA biogenesis [BR:brp03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     103830729
SSDB
Motif
Pfam: Ssu72
Other DBs
NCBI-GeneID: 103830729
NCBI-ProteinID: XP_009104792
UniProt: M4CHZ4
Position
A07:21245330..21246600
AA seq 193 aa
MRFRYAMVCSSNQNRSMEAHFLLKRQGLDVASYGTGSHVKLPGPSAREPNVYDFGTPYKQ
MFDELRRKDPELYKRNGILQMLKRNLNVKLAPQRWQDNAGDGVFDVVMTFEEKVFDSVLE
DLNNREQSLMKTILVMNLEVKDNHEEAAIGGRLALELCQEIEGNETWEDTIDDIVAGFEK
QQRRKLVYSISFY
NT seq 582 nt   +upstreamnt  +downstreamnt
atgaggttccggtacgccatggtctgctcctcgaatcagaaccggagcatggaagctcac
ttcctcctcaagaggcaaggactcgacgtagcttcgtacgggacagggtctcacgtgaaa
ctacctggaccatccgccagagagcctaacgtctacgacttcggaactccgtacaagcag
atgttcgatgaactcaggcgcaaggatcctgagctttacaagaggaatgggatcttgcag
atgcttaagaggaaccttaacgtgaagcttgctccccagagatggcaagataatgctggt
gatggtgtgtttgatgttgtcatgacctttgaagaaaaggtttttgattctgttcttgaa
gatcttaataacagagaacagtcactgatgaaaaccatacttgtgatgaacttggaggtt
aaagataaccacgaggaagcagctattggtggccgtcttgccttggaactctgtcaagag
attgaagggaatgaaacatgggaagatacaatcgatgacattgttgctggctttgaaaag
cagcaaaggcggaagcttgtctatagcatctcattctactga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (15)   

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