KEGG   Brassica rapa (field mustard): 103833810
Entry
103833810         CDS       T03449                                 
Name
(RefSeq) mediator of RNA polymerase II transcription subunit 34
  KO
K10899  ATP-dependent DNA helicase Q1 [EC:5.6.2.4]
Organism
brp  Brassica rapa (field mustard)
Brite
KEGG Orthology (KO) [BR:brp00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:brp03400]
    103833810
Enzymes [BR:brp01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     103833810
DNA repair and recombination proteins [BR:brp03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecQ family DNA helicases
     103833810
SSDB
Motif
Pfam: DEAD Helicase_C RecQ_Zn_bind HRDC RQC ResIII COG3_N
Other DBs
NCBI-GeneID: 103833810
NCBI-ProteinID: XP_009108119
UniProt: M4FBF6
Position
A08:complement(8806635..8811419)
AA seq 705 aa
MESEAIQDELQSLELEINDVQGQISALIEHQDRLYERKSELKTLLKAVSASVTPVAPSCP
DGSSAVENWSEPFEWDSRADDIRFNIFGISKYRANQREIVNVIMAGRDVLVIMAAGGGKS
LCYQLPAILRGGTTLVVSPLLSLIQDQVMGLAALGISAYMLTSTSGKENEKFVYKALEKG
EDDLKILYVTPEKVSKSKRFMSKLEKCHNAGRLSLISIDEAHCCSQWGHDFRPDYKNLSI
LKTQFPKVPMVALTATATQKVQNDLIEMLHIPKCVKFVSSVNRPNLFYSVREKSLVGKAV
VDEIAEFIRESYSNNESGIVYCFSRKECEQIAGELRERGISADYYHAEMDVNMREKVHMR
WSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECVLFFR
SGDVPRQSSMVFYEYSGLQNLYDIVRYCQSKTKCRRSAFFRHFGEPSQDCNGMCDNCALS
SEVKEVDVSDLAKLVVSMVQEMQAKDQRVTMLQLGDKLRTKHKDLSAELKREEIEHLVIK
LIVDSVLKEEFQHTPYSTNAYVTTGPLANQLLQGRKTIKTETSSRQINKKSKRSSSFSGL
ESKLDELRKEISAAHGSMLPHTVLSTQQIGLISSQKPDSLQELESIIGKLKTDKYGDKIL
EVMRHDTVSEQLVEDGTKEDTCKSRSSKRAKTQKNVVLLESSEEE
NT seq 2118 nt   +upstreamnt  +downstreamnt
atggaaagtgaagcgattcaggacgagcttcaaagcttagagctcgagatcaacgatgtt
caaggtcagataagtgctttgatagagcatcaagacaggttgtacgagagaaagtctgag
cttaagacattgttaaaagcagtttcagcttcagtaacacctgtcgcaccttcttgtcct
gatggctcgagtgctgtggagaattggtccgagccattcgagtgggactcacgcgctgat
gacatcaggtttaacattttcggcatatccaaatacagagctaaccagagagaaatagtt
aacgttataatggctggtagagatgttctggtgatcatggcagcaggtggtggcaagagt
ctttgctatcagcttcctgctatacttcgtggtggtacaactcttgttgtcagcccttta
ctctcactcattcaggatcaggttatgggtttggcggctctagggatttcagcttacatg
ctgacttctacttctggcaaggaaaatgagaagtttgtgtacaaggcacttgaaaagggt
gaagatgacctcaagatactttatgtgacacctgaaaaggtatcaaagagtaaaagattc
atgtcgaagcttgaaaagtgtcacaatgctggtcgcctctctcttatttcaattgatgag
gctcattgttgtagtcagtggggtcacgattttcggcctgattacaagaacttgagcatt
cttaaaactcagtttcccaaagttcccatggtggctttaaccgcaactgctacacagaag
gtccaaaatgatctgatagagatgctgcatattcctaaatgcgtcaaatttgttagcagt
gttaacaggccaaatctcttttactcggtgcgagaaaagtcgctggttggtaaagctgtg
gttgatgagatcgcagagttcatacgagaatcatattctaacaatgaatctggaatagtg
tattgtttctctcggaaggagtgtgaacagattgcaggagaactacgagaaagagggata
tctgctgattattaccacgcagaaatggatgtaaatatgcgagaaaaagttcatatgcga
tggagtaagaacaagttgcaggtcattgttggaacagttgccttcggcatgggaatcaac
aaacctgatgtcaggtttgttatccaccacagtttaagcaaatcaatggagacttactat
caggagagtggtcgtgctggtcgtgatgggctcccatctgagtgcgtcctctttttccgt
tcgggtgatgttcccaggcagagttccatggtcttctacgagtattctggtctgcagaat
ctctacgatatagtacgatactgtcagtcgaaaacaaaatgtcgtcgaagtgcttttttc
cgtcattttggagagccgtcacaagattgcaacggaatgtgcgacaactgtgccttgtca
agtgaggtcaaggaagttgatgtatcggacctagctaagctcgtggtttctatggtgcaa
gaaatgcaagctaaggatcaaagagtgacaatgttgcagctgggtgacaaactgagaact
aagcacaaggatctaagtgctgagctaaagagagaagagatagaacatctcgtgataaaa
ctgattgttgactcggtattgaaagaagaattccagcacacaccatactcgacaaacgct
tatgtaacaacgggaccgttggcaaaccaattgttgcaaggaagaaagacgatcaaaacg
gaaacctcaagcagacaaataaacaagaaatcgaaaagaagtagttcattttctggatta
gaatccaagcttgacgagctaaggaaagagatatctgcagctcatggaagcatgctccct
cacactgtcctctcaactcagcagattgggttgataagttcccaaaaaccagattcatta
caagagttggagagcataataggaaaactgaaaacagacaagtacggtgacaagattcta
gaagtgatgagacatgatacggtctctgaacaacttgttgaagatggaacaaaggaagat
acatgtaaaagcagatcaagtaaaagagctaagacacagaagaatgttgttttgttagag
agcagcgaagaagaatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (7)   
   Pfam (7)   
All databases (21)   

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