KEGG   Brassica rapa (field mustard): 103836626
Entry
103836626         CDS       T03449                                 
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD
  KO
K10844  DNA excision repair protein ERCC-2 [EC:5.6.2.3]
Organism
brp  Brassica rapa (field mustard)
Pathway
brp03022  Basal transcription factors
brp03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:brp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    103836626
  09124 Replication and repair
   03420 Nucleotide excision repair
    103836626
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:brp03021]
    103836626
   03400 DNA repair and recombination proteins [BR:brp03400]
    103836626
Enzymes [BR:brp01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     103836626
Transcription machinery [BR:brp03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     103836626
DNA repair and recombination proteins [BR:brp03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     103836626
SSDB
Motif
Pfam: DEAD_2 HBB Helicase_C_2 ResIII DEAD SNF2-rel_dom PIF1 AAA_11 AAA_19
Other DBs
NCBI-GeneID: 103836626
NCBI-ProteinID: XP_009111161
UniProt: A0A397YGA6
Position
A08:complement(22753214..22757215)
AA seq 758 aa
MIFKIEDVTVYFPYDNIYPEQYEYMVELKRALDAKGHCLLEMPTGTGKTIALLSLITSYR
LSRPDSPIKLVYCTRTVHEMEKTLGELKILHDYQVTHLGAQAKILALGLSSRKNLCVNPK
VLAAENRDSVDAACRKRTASWVRALAAENPNVELCDYFESYEKAADNALLPPGVYTLEDL
RAFGKNRGWCPYFLARHMVQFANVIVYSYQYLLDPKVAGIISKELQKESVIVFDEAHNID
NVCIEALSVSVRRVTLEGANRNLNKIRQEIDRFKATDAGRLRAEYNRLIEGLALRGDLSG
TDQWLANPALPNDILKEAVPGNIRRAEHFVHVLRRLLQYLEGRLDTENVEKESPVSFVSS
LNSQAGIEQKTLKFCYDRLHSLMMTLEITDTDEFLPIQTVCDFATLVGTYARGFSIIIEP
YDERMPHIPDPILQLSCHDASLAIKPVFDRFQSVVITSGTLSPIDLYPRLLSFNPVVSRS
FKMSMTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVVRNYGKLLVEMVSVVPDGVVCFFV
SYSYMDGIIATWNETGILKEITQQKLVFFETQDVVETTLALDNYRRACDCGRGAVFFSVA
RGKVAEGIDFDRHYGRLVVMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQA
AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMAIHIAREF
LRKMAQPYDKTGTMGRKTLLTQEDLEKMAETGVQDMVY
NT seq 2277 nt   +upstreamnt  +downstreamnt
atgatcttcaagatcgaagacgtaaccgtctacttcccttatgacaacatatacccagag
caatacgaatacatggtcgaactaaagcgagccctagacgccaagggacattgccttctc
gagatgcccaccggaactggcaaaaccatcgcgcttctctccctcatcaccagctaccgc
ctctctcgtcccgattctcccatcaagctcgtctactgcactcgtactgtccacgagatg
gagaaaacgctcggtgagcttaagatactccacgactatcaagtaacccatctcggcgcc
caggccaagatcctcgcgcttggtctctcctccaggaagaatctttgcgtcaatcctaag
gttttagcggcggagaatcgcgattcagtggacgctgcgtgtaggaaacggacggctagt
tgggttagagctttggccgcggagaatccaaatgtagaactctgtgactactttgagagc
tacgagaaggctgctgataatgccttattgcctcctggtgtttatactttagaggatttg
agggcgtttggtaagaatcgaggatggtgtccttacttccttgccaggcatatggttcag
ttcgccaacgttattgtttacagctaccagtatttgctcgatcctaaggttgctggaatc
atatccaaggagttacaaaaggagtctgttattgtgtttgacgaggcccataatatagac
aatgtgtgtattgaagcactcagcgtcagtgtgagaagagttacacttgaaggagctaat
cgaaatcttaataaaattaggcaagaaattgataggttcaaggctacggacgctggaaga
ctgcgagctgaatacaaccggctaattgagggtttggcactgagaggggacttatctgga
actgatcaatggcttgcaaaccctgcactgcccaatgatattctaaaggaggctgtccca
gggaatattagacgggctgagcattttgtgcatgtgttacgccggttacttcagtacttg
gaaggacggctagatactgagaacgtggagaaagaaagccctgttagctttgtatcctcc
cttaattctcaggctggaattgagcagaaaacactcaagttctgttatgaccggctccac
tctctcatgatgacccttgaaattacagataccgatgagtttttgcctatccagacagta
tgtgactttgcaactcttgttgggacatatgcacggggattttccatcatcattgagcct
tatgacgaaagaatgcctcatattccagatcctatattgcagttgagctgtcatgatgcg
tctctggctataaaaccggtgtttgatcgtttccagtcagtagtgattacgtcagggacc
ctgagtccaattgatctttatccccgtcttcttagtttcaatcctgttgttagtagaagc
tttaaaatgtcgatgacacgagactgcatctgccccatggttttaactcgaggaagtgat
cagctccctgttagcaccaaatttgacatgagaagtgatccgggtgttgtgaggaattat
ggaaagcttttggtagagatggtatctgttgttcctgatggagttgtctgcttcttcgtt
agttactcatacatggatggcattattgctacatggaatgaaactggaattctgaaggaa
ataacgcaacagaaacttgtcttcttcgaaacgcaagatgttgtagaaacaacactagca
cttgacaattatcgcagggcttgtgattgcggaagaggtgcagttttcttctctgtagcc
agggggaaagttgctgaagggatcgattttgatcgtcattatggaagactggttgtaatg
tttggagtgccttttcaatatacattaagcaagatattacttgcacgattggagtatttg
cgtgatacctttcaaataaaggaaggcgatttcctaacgtttgatgccttgaggcaagca
gctcaatgcgtggggcgagtaatcagatcaaaggctgattatgggatgatgatatttgca
gacaagagatatagccgtcatgacaagcggtctaaattaccaggttggatactatctcat
ctgcgtgatgcacacttgaatttaagcactgacatggctattcatattgcccgagagttc
ctaaggaaaatggctcagccgtacgataagactggtactatgggcaggaaaactctgtta
acacaagaggatttggagaagatggctgagaccggagtgcaggacatggtttattag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (9)   
   Pfam (9)   
All databases (24)   

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