KEGG   Brassica rapa (field mustard): 103852565
Entry
103852565         CDS       T03449                                 
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-1 isoform X1
  KO
K03141  transcription initiation factor TFIIH subunit 1
Organism
brp  Brassica rapa (field mustard)
Pathway
brp03022  Basal transcription factors
brp03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:brp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    103852565
  09124 Replication and repair
   03420 Nucleotide excision repair
    103852565
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:brp03021]
    103852565
   03400 DNA repair and recombination proteins [BR:brp03400]
    103852565
Transcription machinery [BR:brp03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     103852565
DNA repair and recombination proteins [BR:brp03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     103852565
SSDB
Motif
Pfam: BSD PH_TFIIH
Other DBs
NCBI-GeneID: 103852565
NCBI-ProteinID: XP_009127714
Position
A02:10819807..10824664
AA seq 593 aa
MSDWQVKYKSSLKDRGTEGILKLREGMLLFVPNDPTSDSKLKVLTPNIKSQKYTKEGSKK
PAWLNLSNKQGDSHIFEFQNYQDMHACRALITKALAKCEEEQPKKPAAVLTSAEQLSIAD
LELRFKVLRENIELQRLHKEFVETKVLTEDEFWATRKKLLGKDSIRKSKQQVGLKSMMVS
GIKPSTDGRTNRVTFNLTSEIIFQIFAEKPAVRQAFINYVPSKMTEKDFWTKYFRAEYLY
STKNTAVAAAEAAEDEELAVFLKPDEILAQEARQKIRRVDPTLDMEADQGDDYTHLMDHG
IQRDGTMDVVEPQNGQFRRSLLQDLNRHAAVVLEGRNIDVDSENTRSVAEALARVKQVSK
ADGETTKDANQERLARMSRLAEMEDLQAPQNFPLAPLSIKDPRDYFESQQGNVVNEPRGA
GTLKRNVHEAYGSLKESILEIRTKGLRDPLIKPEVAFEVFRSLTQTISTAKNIIGKNPRE
SFLDRLPKSTRDEVLHHWTSIQELLKHFWSSYPITTTYLHTKVGKLKDAMSNSYSQLEAM
KESVQSELRHQLSLLVRPMQQALDAAFQHYDADLQRRTAKSARGSAGEANGSV
NT seq 1782 nt   +upstreamnt  +downstreamnt
atgtcggactggcaagtgaaatacaagagctctctgaaggatcgaggaactgagggaatc
ctcaaattaagggaagggatgctgctcttcgttccaaatgatcccacctctgattcaaag
cttaaagtcctcactcccaacatcaaaagtcaaaaatatactaaagaaggatcaaaaaaa
cctgcttggctcaatctctccaacaagcagggagacagtcatatctttgagtttcaaaat
tatcaggacatgcatgcttgccgtgctctcatcactaaggccctagccaaatgtgaagag
gagcagcctaagaaaccagctgctgtcttgacctctgctgagcaactcagtattgctgac
ttggagctacgcttcaaggttcttcgagaaaatattgagttgcagagattgcataaggaa
tttgttgaaactaaagtcctgactgaagatgaattctgggctactaggaagaaactactg
ggtaaagattccatcagaaagtcgaagcaacaggtcggactgaagagcatgatggtttcc
ggcatcaaaccttctactgatgggcggactaatagggtgacgttcaacttaacctctgag
ataatttttcagatttttgctgagaagccagctgttcggcaggcattcattaattatgtt
ccgagtaagatgacagaaaaagacttctggacaaaatattttagagcagaatatctttac
agcaccaaaaatacagcggtagctgcagcagaagctgctgaggacgaggaactcgctgtc
tttctaaagcctgatgagatattggctcaggaagctcgtcaaaagatcagacgggttgat
ccaactcttgacatggaagctgaccagggagatgactacactcatcttatggaccacggg
atccagcgagatggcaccatggatgttgttgaacctcagaatggtcagtttagaagatca
cttttgcaagatcttaatcgtcatgctgctgttgtattggaaggcaggaacattgatgtt
gattcagaaaacacaaggagtgttgcagaggcgctcgcacgggttaaacaagtaagcaaa
gctgatggtgaaaccactaaagacgctaatcaggagagattggcgagaatgtcccgtttg
gctgaaatggaggatcttcaagcaccgcagaatttcccgttagcaccgctctctatcaag
gaccctcgtgattactttgaatctcaacaaggaaacgtcgtcaatgaacctagaggagca
gggacattaaagagaaatgttcatgaagcttacggatcgttaaaagaatccattttggag
attagaacgaaagggttaagggatccgttgattaaacctgaagttgccttcgaggttttc
aggtcattaacccaaactatctccaccgccaaaaatattatcgggaagaacccgcgagag
agctttctggacagattgccgaagtccactagagacgaggttttacatcattggacatca
atacaagaattacttaaacatttttggtcatcttacccgataacaaccacatatcttcat
accaaagtagggaagctgaaggatgcaatgtccaatagttattcacaactcgaggcaatg
aaagagtcggtgcaatcggaactccgccatcagctttctctactagttcgtccaatgcaa
caggctcttgatgctgcgttccaacactacgatgctgacttgcagagaagaaccgctaag
agcgccagaggtagcgccggcgaagcaaacgggtctgtttag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (2)   
   Pfam (2)   
All databases (16)   

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