KEGG   Brassica rapa (field mustard): 103853075
Entry
103853075         CDS       T03449                                 
Name
(RefSeq) replication factor C subunit 5
  KO
K10756  replication factor C subunit 3/5
Organism
brp  Brassica rapa (field mustard)
Pathway
brp03030  DNA replication
brp03410  Base excision repair
brp03420  Nucleotide excision repair
brp03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:brp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    103853075
   03410 Base excision repair
    103853075
   03420 Nucleotide excision repair
    103853075
   03430 Mismatch repair
    103853075
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:brp03032]
    103853075
   03036 Chromosome and associated proteins [BR:brp03036]
    103853075
   03400 DNA repair and recombination proteins [BR:brp03400]
    103853075
DNA replication proteins [BR:brp03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    103853075
  DNA Replication Termination Factors
   ELG1-RFC complex
    103853075
Chromosome and associated proteins [BR:brp03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    103853075
DNA repair and recombination proteins [BR:brp03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     103853075
  Check point factors
   HRAD17(Rad24)-RFC complex
    103853075
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 Rad17 AAA_22 AAA_11 AAA_16 AAA_14 AAA_assoc_2 DUF815 RuvB_N AAA_5 ATPase_2 AAA_24 AAA_3 AAA_19 AAA_30 ResIII bpMoxR AAA_7 AAA_18 DNA_pol3_delta MCM Gp44_lid nSTAND3 Mg_chelatase AAA_28
Other DBs
NCBI-GeneID: 103853075
NCBI-ProteinID: XP_009128230
UniProt: M4CVR3
Position
A02:complement(14279863..14282128)
AA seq 358 aa
MTEITSAMDIDVEENHPRKPKDVAGGFGAPPQSKATPWVEKYRPQSLDDVAAHRDIVDTI
DRLTNENKLPHLLLYGPPGTGKTSTILAVARKLYGPKFRNMILELNASDDRGIDVVRQQI
QDFASTQSFSLGKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALIGNHVNKIIP
ALQSRCTRFRFAPLDPVHVSQRLKHVIEAEGLDVSESGLAALVRLSNGDMRKAMNILQST
HMASVKITEEEVYLCTGNPLPKDIEQISHWLLNESFAESYKKISEMKTRKGLAIVDIVRE
VTMFVFKIKMTSHVRVQLINDLADIEYRLGFGCNDKLQLGAIISTFTHARSALIAAAK
NT seq 1077 nt   +upstreamnt  +downstreamnt
atgactgagatcacatcggcgatggacatcgacgtagaggagaatcatcctcgcaagccg
aaagacgtcgccggcggctttggtgctccgccgcagagcaaggcgacgccttgggtcgag
aagtaccgtcctcaatcgctagacgacgtcgcagcacatcgtgacattgttgatacgatt
gataggttgaccaatgagaacaagttgcctcaccttctgctctatggtcctcccggtaca
ggcaaaacatccaccattctagccgttgccaggaaactttatggccccaagttccgtaat
atgattcttgaactcaacgcctctgatgatagaggcattgatgttgtcaggcagcagatt
caagatttcgctagcactcagagcttctctttaggaaaatcttcggtgaagttggttctg
ctagacgaagcagatgccatgacaaaagatgctcagtttgctttgcgtagagtgattgag
aagtacacaaagagtactaggtttgcgctcatcggaaaccatgtcaacaagatcatccca
gctttacagtccagatgtacccgatttagatttgcccctcttgatcctgttcatgtgagt
caacgtcttaaacatgtcatagaagctgaagggcttgatgtgagtgagagtggtttggcg
gctcttgtacggctgagcaatggagacatgagaaaagccatgaacattttgcagtcaacg
catatggcgtcagtgaaaattacagaggaagaggtttacctctgcacaggaaacccattg
ccaaaggacattgagcagatatctcattggcttctaaatgaatcatttgctgaaagctac
aaaaaaatatcagaaatgaagacgagaaaaggacttgcgattgttgatatcgtcagagag
gttaccatgtttgtttttaagatcaagatgacttcacatgtcagagtacaactgataaac
gatttggcagacatcgagtacagattgggttttggatgcaacgacaaactgcagcttgga
gctatcatttctactttcacacacgccaggtctgctttaattgctgcagcaaagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (27)   
   Pfam (27)   
All databases (43)   

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