KEGG   Brassica rapa (field mustard): 103856576
Entry
103856576         CDS       T03449                                 
Name
(RefSeq) tRNA-splicing endonuclease subunit Sen2-2
  KO
K15322  tRNA-splicing endonuclease subunit Sen2 [EC:4.6.1.16]
Organism
brp  Brassica rapa (field mustard)
Brite
KEGG Orthology (KO) [BR:brp00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:brp03016]
    103856576
Enzymes [BR:brp01000]
 4. Lyases
  4.6  Phosphorus-oxygen lyases
   4.6.1  Phosphorus-oxygen lyases (only sub-subclass identified to date)
    4.6.1.16  tRNA-intron lyase
     103856576
Transfer RNA biogenesis [BR:brp03016]
 Eukaryotic type
  tRNA spricing factors
   tRNA splicing endonuclease complex
    103856576
SSDB
Motif
Pfam: tRNA_int_endo tRNA_int_endo_N
Other DBs
NCBI-GeneID: 103856576
NCBI-ProteinID: XP_009131933
UniProt: M4CR31
Position
A03:4702605..4704384
AA seq 249 aa
MAPRWKWKGAEAKALAEPISKSVSELQLSLAKTSGSLSSCNVLLAVEPEQAELLDRCCFG
RLVLSAEKVKKWIQLSFEEAFYLFYILKCIKLTLQGRCLENEVDTWMYMRSKRPNFPVFF
KAYSHLRSKNWVLRSGLQYGVDFVAYRHHPSLVHSEYSVLVQSGDSDRLRVWSDVHCAVR
LSGSVAKTLLTLHVSGNSNREDLNLPTCLENYRVEEQTISRWSPELSREDDETTSPKPKV
TNVSNLKTP
NT seq 750 nt   +upstreamnt  +downstreamnt
atggcgccaagatggaaatggaaaggagctgaagcaaaagctcttgcagaacctatttca
aaatcagtctcagagctccaactctctctagccaaaacatcgggctccctctcgagttgc
aacgtactcctagcggttgagccagagcaagctgagctgctcgaccgctgttgtttcggc
agactcgtcctatccgctgagaaagtcaagaaatggattcagctatccttcgaagaggct
ttttacttgttctacatcctcaaatgcatcaaactcacccttcaaggccgttgcttggag
aacgaagtcgacacgtggatgtacatgagatcaaaaagaccaaacttcccggtgttcttc
aaagcttattcacatttacgatccaagaactgggttttgagatccgggttgcagtacggt
gtggatttcgtggcgtaccgtcatcatccttctcttgtccactctgaatactccgttttg
gttcagtctggtgacagtgatcggttaagagtgtggtctgatgtccattgtgctgttcgg
ttaagcggaagtgttgctaaaacgttgttaactctccatgtcagtggtaactctaacaga
gaggatttgaatctacctacgtgtttggagaactacagagttgaagagcaaacgataagt
agatggagcccagaactcagtcgtgaagatgatgaaaccacaagtccaaaaccaaaagtt
accaatgtgagtaatttgaaaacgccatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (14)   

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