KEGG   Brassica rapa (field mustard): 103860031
Entry
103860031         CDS       T03449                                 
Name
(RefSeq) SNF2 domain-containing protein CLASSY 4
  KO
K10875  DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
brp  Brassica rapa (field mustard)
Pathway
brp03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:brp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    103860031
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:brp03400]
    103860031
DNA repair and recombination proteins [BR:brp03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    Rad54 family proteins
     103860031
SSDB
Motif
Pfam: SNF2-rel_dom Helicase_C ResIII Helicase_C_2 ERCC3_RAD25_C
Other DBs
NCBI-GeneID: 103860031
NCBI-ProteinID: XP_009135889
UniProt: M4CCL4
Position
A03:complement(20550048..20554631)
AA seq 1066 aa
MDMTTCVGRRTRSRTESYLNDLLNQSKGISVAVQSNSRPAPLRDSSSPEKPKRRRKRKSK
DDDEVEFVGTIYPKGKREKEIVVVEDDNVGSPPMIALSSESDRACGVSVDDAMGDDDGDV
EFVRTIYPKEDDRAVDDENLIGEESPDDDDVVYLGTLLRDQEHVDRVSDLDVDDANLMGE
EKILEPDDEVMSLSSGSDDEASIEDLGTEVSDYTEKSSDSSYAESSDSGFDCSEDDEFRG
ARDTATVKKKSPSKRVYTREKRKTSYRKNDLDVSDLLAKSIWQRKKIVEEDIFSEDETAE
VDTREDPIVRERSSEKVHEQRKRRRFHREKKKNHLSVVDLLGDSFENFDVGENLWVSPPI
NLRFGCEEPEPVEKTEEEKEIDRLWQDMALALSLEGLHSSTYFKNGDVSCSNGKHDFVLD
EEIGLKCRCCSYVSVEMKDVSPAMDKYRANVKYRDTVNYKNTCRTKGDPLLDSLDLEASE
HNSNVASLKDTQGTVWEYIPGIKNTLYPHQREGFEFMWKNLAGTTKLDELKSSVVKESGG
CIISHAPGTGKTRLTIVFLQSYLQQFPDSHPVVIAPASLLLTWEEEFKKWNSNIPFYNMS
NQELSGLENPSAVSLLKGNRQHRSKTDSVRMVKLYSWRNKKSILGISYSLYEKLTGNKCA
SGETQKFRKMLLDFPGLLVLDEGHTPRNQNSCIWKVLTEVKTEKRIILSGTPFQNNFKEL
SNVLCLTRPAYKDKISSRLHDLTRLSQEGKNGRFDEEIGIAELKDMIAPFVHVHKGNILR
ESLPGLRDCVVVLNAPFQQAKILTRIDHSQKTFDLEHKLSAVSVHPSLYLRRKQTDKERL
TIGPVVLKSLESLTLESKEGAKTRFLIDFIRFSETVKEKVLVFSQHIDTLELIRDQLSAV
FGWTEGEEILYMHGQLQQKFRQRLINNFNKSDSKSKVLLASTKACSEGINLVGASRVVLL
DVDWNPSVERQAISRAYRIGQKRVVYTYHLMVKGTTEWDKYCKQNKKHRISEMVFSPTNE
KDKLIENEVVSEDKILDEMVRHEKLKDMFEKILYRKKESDMFTNIL
NT seq 3201 nt   +upstreamnt  +downstreamnt
atggatatgactacttgcgtcggcagaagaactcgctcgaggactgaatcttacttgaac
gatcttctgaaccaatcgaaggggatctccgtcgccgttcaatctaatagcaggcccgcg
cccttgcgcgattctagttcgccggagaagccgaaacggcgccggaaaaggaagagcaag
gatgatgacgaagtggagttcgtcggaactatctatccgaaaggtaagcgagagaaggag
attgtagtagtagaggatgacaatgtaggttcacctccgatgattgctcttagttcagag
tcagatagggcttgtggtgtgagtgtagatgatgccatgggcgatgatgatggtgatgtc
gaattcgtaagaactatctatcctaaagaggatgatcgagctgtggatgatgagaatttg
attggtgaggagtctcctgatgatgatgatgttgtttatcttggaacattgctgagagat
caagaacatgttgatagggttagtgatttggatgtggatgatgctaatttaatgggtgag
gagaagattttagagcctgatgatgaggttatgagtcttagttctggttctgacgacgaa
gcttctatagaagacttaggaactgaagtttctgattacacggagaaaagctcagattct
tcttatgcggagagctctgatagtggtttcgattgttctgaggacgatgagtttcgtggt
gccagagacaccgctacagttaagaagaagagcccaagtaaaagagtatacactcgggag
aagcggaagacttcttataggaagaatgatttggatgtatctgatctactagcaaaatct
atttggcagagaaagaaaattgtagaggaagacattttctctgaagacgaaacagcagag
gttgataccagagaagatcctattgttagagagagatcaagtgagaaggtacatgagcag
aggaaacgaaggagattccatagggagaaaaagaagaaccatttgagtgttgttgatctg
ctaggagattcttttgagaattttgatgttggggaaaacctgtgggtttcgcctcctata
aacctgagatttggttgtgaagagcctgagccagttgagaaaacagaagaggagaaagaa
atagacaggttgtggcaagatatggccttagctttatcattggaaggactacactcatct
acttattttaaaaatggagatgtgtcatgtagcaacgggaagcatgatttcgttcttgat
gaggaaattggtctgaaatgccgctgctgttcttatgtctccgtcgagatgaaagatgtc
tcacctgccatggacaagtatcgtgctaatgttaagtatcgtgatactgttaactacaag
aatacatgtcgtaccaaaggtgaccctttacttgacagccttgatttggaagcgtcagaa
cacaacagcaatgtggcgtctctgaaagatacacagggaacagtctgggaatacatccct
ggcattaaaaatactctgtacccacaccaacgagaaggctttgagtttatgtggaagaac
ttagccgggacaacaaaactggacgagttaaaaagctcagtggtaaaagaaagtggcgga
tgcattatttctcatgcccctgggactggcaagacgcgtttgaccatcgtgtttcttcag
tcatacttacaacagtttccagatagccatcctgtggtcatagctcccgcaagtttactt
ctcacatgggaagaagagttcaagaaatggaattcaaacattccgttttataacatgagt
aatcaagagttgtcagggctagagaacccatcagctgtttcacttctaaaaggaaataga
caacataggagcaaaacggattctgtccgtatggttaagctatattcatggaggaacaag
aagagcattcttggaatcagttacagtctctatgagaagctcactgggaacaagtgcgcc
tctggggagacgcaaaagtttagaaagatgttgctagactttccggggctcctggtcctt
gacgaaggccacactcctaggaaccagaatagttgcatctggaaagttctcacagaagtg
aaaacggagaagcgtatcatactctcagggacaccgtttcagaacaatttcaaggagctt
tctaacgtcttgtgccttacgagaccagcttataaagataagatctcttctaggctccat
gatcttacgaggctgagccaagaaggcaagaacgggaggttcgatgaagagattggcatc
gcggagcttaaggatatgattgctccttttgttcatgtccacaaagggaacatccttcga
gagagcctcccaggtctaagagactgtgttgtggtgctgaacgctccttttcaacaggcg
aaaatcctgacgagaatcgaccattctcaaaagacgtttgaccttgagcacaagctttca
gctgtttcagtacacccgtctctgtatctgcgacgcaagcagacagacaaggaacggtta
accattgggccggtggtactgaaaagcctggagagccttacgcttgagtcaaaggaaggt
gcgaaaacgaggttcttgatcgacttcatccggttcagcgaaacagtgaaagagaaagtc
ttggtgtttagtcaacacattgacacgctagaactgatcagggaccagctcagtgcagtg
tttggctggactgaaggagaagagattctctacatgcacggtcaactccaacagaaattc
agacagcgtctgatcaacaacttcaacaaatcagacagcaaatccaaagtgctactagca
tcaacaaaagcatgctccgaaggtattaatcttgtcggagcttcgagggttgtgcttctt
gatgttgattggaacccttctgttgagaggcaagccataagtcgagcttacagaattggt
cagaagagggttgtgtacacttaccatctcatggttaaaggcacaactgagtgggacaag
tactgtaagcaaaacaagaaacatcgcatatctgaaatggtcttctctcctaccaacgag
aaagataagctgattgaaaacgaagttgtttctgaagataaaattcttgacgagatggtt
cgccatgagaagctgaaagacatgtttgagaagatactttatcgcaaaaaagaatccgac
atgtttacaaacattctctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (16)   

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