KEGG   Brassica rapa (field mustard): 103860073
Entry
103860073         CDS       T03449                                 
Name
(RefSeq) LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase 24
  KO
K12835  ATP-dependent RNA helicase DDX42 [EC:5.6.2.7]
Organism
brp  Brassica rapa (field mustard)
Pathway
brp03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:brp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    103860073
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:brp03041]
    103860073
Enzymes [BR:brp01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     103860073
Spliceosome [BR:brp03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    103860073
 Complex B
    103860073
 Complex C
   U2 SnRNP specific factors
    103860073
SSDB
Motif
Pfam: DEAD Helicase_C ResIII
Other DBs
NCBI-GeneID: 103860073
NCBI-ProteinID: XP_033142831
Position
A03:complement(12029163..12034173)
AA seq 723 aa
MSIRNSTRFRGGDNSEDADVDNIDFTENEEDEEDDVDNGASASANDEIDPLDAFMEGIHE
EMKAAPPPKPKEKVERYKDDEDDDHVVSFLKAKKDLGLTLAADALNAGYNSDEEVYAAAK
AVDAGMLEYDSDDNPIVVDKRKIEPIQALDHSSIDYEPINKDFYEEVESISRMSEQEALD
YRKSLGIRVSGFDVPKAVKTFEDCVFSTQIMSAIKKQAYEKPTTIQCQALAVVLSGRDVI
GIAKTGSGKTAAFVLPMIVHIMDQPELQREEGPIGVICAPTRELAHQIFLEAKKFSKAYG
LRVSAVYGGMGKHEQLKELKAGCEIVVATPGRLIDMLKMKALTMMRASYLVLDEADRMFD
LGFEPQVRSIVGQIRPDRQTLLFSATMPWKVEKLAREILSDPIRVTVGEAGMANEDITQV
VNVIPSDADKLPWLLEKLPGMIDEGDVLVFASKKATVDEIEAQLTLNGFKVAALHGDKDQ
ASRMETLQKFKSGIYHVLVATDVAARGLDIKSLKTVVNYDTAKDMDMHVHRIGRTGRAGD
KDGVAYTLVTQREARFAGELINSLVAAGQNVPQELMDLAMKDGRFKSKRDGRKGGGKKGG
GRGGGNRGVRGVDFGLGIGFNSESSGTSSQAAPSRXGVINSVRTGVMAQFKNSFVAATPS
NQAYPNKRPALTGFVSGGAIGGDMGRAQTQTPPVATSHHSSQKNTQSSEDRPRERKRRSG
WDS
NT seq 2172 nt   +upstreamnt  +downstreamnt
atgtctattcggaactctacgaggtttcgcggcggagataactcagaagacgccgatgta
gataacattgattttacagaaaacgaagaggatgaagaagacgacgttgacaacggcgcc
tctgcatctgctaacgacgagatcgatccactagacgcattcatggagggaatccacgag
gagatgaaggctgctccacctcccaagccaaaggagaaagtggagaggtacaaggacgac
gaagacgacgatcatgtcgtgagtttcctcaaggccaagaaggatttggggctcacgcta
gctgcggacgcgcttaacgctggttacaactccgacgaggaggtgtatgctgcagctaag
gcagtagatgctgggatgctggagtacgattccgatgataatccgattgttgtggataaa
aggaagatcgagccgattcaagcgcttgatcatagttcaattgattacgaaccgatcaat
aaggacttctacgaggaggttgaatcaatatccaggatgagtgaacaagaagctttggat
tatcgtaagagtttggggattcgtgtgtccggatttgatgttcctaaggcagtaaagacc
tttgaggattgtgttttttccacacagatcatgagtgctatcaagaaacaagcttatgag
aaacccactaccatacagtgtcaagctttagcggttgtgctctctggtcgagatgttatt
ggcatagccaaaactggttcagggaagaccgcagcttttgttcttcccatgattgttcat
attatggaccagccggagcttcagagagaagaaggtcctattggtgtcatatgtgcccca
accagagagctggcgcatcagatattcttggaagcgaagaaattctcgaaagcgtatggc
ttacgagtctcagctgtgtacggtggaatggggaaacatgagcagttgaaagaactcaag
gcgggatgcgagatagttgttgctactcctggaaggttgatagatatgctgaagatgaag
gctttgacaatgatgagagcctcgtatctggttcttgacgaggctgatcggatgtttgac
cttggttttgagccgcaagtgaggtctatcgttggccagattcgtccagatcgccagact
ttactgttttcagccactatgccttggaaagttgaaaagttagctagggagatcctttcg
gatcccattagagtcactgttggtgaagctgggatggctaatgaagatattacacaggtt
gtcaatgtgataccatcagatgctgacaaacttccttggctacttgagaagctacctgga
atgattgatgaaggtgatgtattggttttcgcttctaaaaaggccacggttgatgagatc
gaagcgcagctgactctgaacggttttaaagttgctgcccttcacggtgataaagaccaa
gcatcacgaatggaaacgttgcagaagttcaaatctggaatctaccatgtgctagttgcc
accgatgttgctgcccgaggtctcgacattaaatcgcttaagacagtggttaactacgac
actgctaaagacatggacatgcatgtacatcgtattggtagaacaggtcgtgctggtgac
aaagatggggttgcctacacacttgttacgcagagagaggctagatttgctggtgaactg
attaacagtctggttgctgctggtcagaatgtgcctcaagaactcatggatctcgccatg
aaggatggacgattcaagtccaagcgtgacggaagaaaaggaggtgggaagaaaggtgga
ggacgaggtggtggaaatagaggagtacgaggagttgattttggtcttggtattggattt
aactcggaatcaagtgggacatcgtctcaagctgcaccaagtaganaaggggtgatcaat
tctgtgagaaccggagtaatggcccaattcaagaatagctttgtggctgctacgccatca
aaccaagcttatccgaacaagagacccgccctaacgggatttgtctcaggtggggccatt
ggtggggacatgggtagagctcaaactcaaactcccccagtagcaactagtcatcactcg
agtcaaaagaatacacagagttctgaagatcggccaagagagaggaaaaggagatctggt
tgggatagttga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (14)   

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