KEGG   Bipolaris sorokiniana: COCSADRAFT_96111
Entry
COCSADRAFT_96111  CDS       T03124                                 
Name
(RefSeq) hypothetical protein
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
bsc  Bipolaris sorokiniana
Pathway
bsc03030  DNA replication
bsc03410  Base excision repair
bsc03420  Nucleotide excision repair
bsc03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:bsc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    COCSADRAFT_96111
   03410 Base excision repair
    COCSADRAFT_96111
   03420 Nucleotide excision repair
    COCSADRAFT_96111
   03430 Mismatch repair
    COCSADRAFT_96111
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bsc03032]
    COCSADRAFT_96111
   03400 DNA repair and recombination proteins [BR:bsc03400]
    COCSADRAFT_96111
Enzymes [BR:bsc01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     COCSADRAFT_96111
    6.5.1.6  DNA ligase (ATP or NAD+)
     COCSADRAFT_96111
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     COCSADRAFT_96111
DNA replication proteins [BR:bsc03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    COCSADRAFT_96111
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     COCSADRAFT_96111
DNA repair and recombination proteins [BR:bsc03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     COCSADRAFT_96111
   NER (nucleotide excision repair)
    Other NER factors
     COCSADRAFT_96111
   MMR (mismatch excision repair)
    Other MMR factors
     COCSADRAFT_96111
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-GeneID: 19141661
NCBI-ProteinID: XP_007702956
JGI: Cocsa1_96111
UniProt: M2R3A0
Position
Unknown
AA seq 883 aa
MAPKQATLGKFFGKPNGDAKQQSKLAFSTKPKPSKKDSTPQEEPQSSPKDLNKEQDEEVG
SDAEVRAPVKEQVESDGEAMEVDSVSSETGKKRQIKEEVEEESEEEPPSKRQRRKPSPKK
AAAKPKTEKASPKSKKSAAKSKAAEPEDEEEEASTKAKGKKGKKEAEKSSALAKEETESS
KEQEEDEVVSSEEEPEEVKVKARKQVQTTLASNTKDPYPDWKPGEPVPYAALCTTFSKIE
MTTKRLEILAHCSLFLRQVLRLTPSDMLPTVMLMVNKLAADYAGIELGIGESLIMKAISE
STGRSLQHIKSDQNEIGDLGLVAAKSRSKQPTMFKPKALTVEGVRKGLMAIATIEGQGAQ
GRKVDGIKKLLSAADAHNSGKNVDIEKDKGGPSEAKFIVRTLEGKLRLGLAERTVVVAVA
QAMIFHEMSLQGKTPSTEDLGKAEAMLKTVYSELPSYEVIIPAMIEHGIMNLRENCRLQP
GVPLKPMLAKPTKSITEVLDRFEGKDFTCEYKYDGERAQIHFVAHDAEIELATEAPSAGK
SERGVSNIFSRNSEDLSKKYPDILAKLPTWVKEGTKSFVLDCETVAWDMVEKKVLPFQQL
MTRKRKDVKVEDVKVKVCVFAFDILYLNGEALVTKSFRERREHLKEAFVPVEGEFAFAKY
GNTNELEEIQTLLEDSVKEGCEGLMVKMLDGPESYYEPSKRSQNWLKVKKDYLAGVGDSL
DLVVLGAYYGKGKRTSWYGAFLLACYNPSTEKYETVCNIGTGFSEAILETLHKTLSEIVI
DRPKPFYTHSTGNKDQPDVWFEPRYVWEVKTADLTLSPRYKAAAAEVGGGGKGVSLRFPR
FIKEREDKKPDQASSSRMIAEMYQRQESVAKNKGPSVDDDFEY
NT seq 2652 nt   +upstreamnt  +downstreamnt
atggctcctaagcaagctacacttggcaagttctttgggaaacccaacggcgatgcaaag
cagcaatcgaaactagccttttctacgaaaccgaagccaagcaagaaagattcaacacca
caggaagagccacaatcctcaccaaaggacctgaataaggaacaagatgaggaggtcggc
tcggacgcagaggttagagcaccggtcaaggagcaagtagagtcagatggcgaggcaatg
gaggtggatagcgtaagctctgagactggcaagaagaggcaaatcaaagaagaggtagaa
gaggagtctgaggaagaacctccaagcaaacgtcaacggagaaaaccttcgccgaagaag
gcagccgcgaaaccaaagactgaaaaggcatcgcccaagtcaaagaaatctgctgctaaa
tccaaggctgcagagccagaagacgaggaagaggaagcgtcgacgaaggccaagggaaag
aagggcaagaaggaggctgaaaagtcttctgcactagcaaaggaggaaaccgaatcgagc
aaggagcaagaagaggatgaggtggtcagctctgaagaggagcctgaagaggtcaaggtc
aaggcgcgaaagcaggtacagacaacccttgcgtccaacaccaaggacccatatcccgat
tggaaaccaggcgagccagttccatatgcggcactatgcacaacgttttcgaagattgag
atgacgacgaagcgcttggagattcttgcacactgctcgttgtttttaagacaggttttg
cgattgactccatccgatatgctgccaactgtcatgctcatggttaacaagcttgcagct
gattatgcaggcattgagcttggtattggcgagtcgctaatcatgaaggcaatttccgag
agtactggacgaagcttacaacacatcaagagcgatcagaacgaaatcggagatcttggc
cttgttgcagcaaagagtcgatcaaaacagcctaccatgttcaagcccaaggcgttgaca
gtcgagggtgtgcgcaagggacttatggccatcgctactatcgaaggacaaggtgctcag
gggcgcaaggttgatgggatcaagaagctgctgtcagcggcagatgcgcacaactctggc
aagaacgttgatattgagaaggacaaaggtggacccagtgaagccaagttcatcgtgcga
acactcgagggtaaacttcgactaggccttgctgagaggactgttgttgtagctgtcgca
caggcaatgatcttccatgaaatgtcacttcagggcaagacgccatcgacagaggatctg
ggcaaagcagaagctatgctaaagacggtttacagcgagctaccgagttacgaagtcatc
atcccagcaatgattgaacacggcatcatgaacctgcgcgagaactgtcgcctacagccc
ggtgtacccctgaagcctatgcttgccaagccaacgaagtccatcacggaggtgttagat
cgctttgagggcaaggactttacttgcgaatacaagtacgatggagagcgcgcacagatc
cactttgtcgctcacgatgcagagatagagctggctactgaagcacccagcgctggcaag
agcgagcgtggcgtgtccaacatcttctcgcgcaactctgaggatctgtctaagaaatat
cctgatattctcgccaagctgccaacttgggtcaaagaaggcacaaagagcttcgttctt
gactgcgagacggttgcctgggatatggtagagaagaaggtgctgccttttcaacagctc
atgacgaggaagaggaaggatgtcaaggtcgaagacgtcaaggtcaaggtttgcgttttt
gcctttgatatcctctatctcaatggcgaggcactagtaacgaagtcattccgtgagcgt
cgcgagcatctcaaagaagccttcgtaccggtcgaaggcgagtttgcatttgccaagtat
ggcaatacgaacgaactagaggagattcaaacactcctcgaagactcggtcaaggaaggc
tgcgaaggcctcatggtcaagatgttggacggtccagaatcttactacgagccatccaag
cgctcgcagaattggctcaaggtcaagaaggactaccttgccggtgtcggtgattcactg
gatctcgtggtgctgggagcctactacggcaaaggcaagcgtaccagctggtatggtgcc
tttttgcttgcctgctacaatccttcgacggaaaagtatgaaacagtctgtaacattggt
actggtttctctgaagccatcctggaaactctgcacaagacactttctgagattgtcatc
gaccgaccaaagccattctacacacattcgactggcaacaaagaccagcctgacgtatgg
ttcgagccgcggtacgtgtgggaggtcaagactgcggatctcaccttgtcgccacggtac
aaggcagctgcagctgaagttggcggtggtggcaagggtgtcagtttacgcttcccacga
ttcatcaaggagagggaggacaagaagccggatcaggcgagttcaagtcgtatgattgcg
gaaatgtaccaaaggcaagaaagtgtggccaagaacaagggacctagtgttgatgacgac
tttgagtattga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (11)   
   KEGG COMPOUND (11)   
Chemical reaction (7)   
   KEGG ENZYME (3)   
   KEGG REACTION (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (39)   

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