KEGG   Bifidobacterium scardovii: BBSC_0532
Entry
BBSC_0532         CDS       T03975                                 
Name
(GenBank) DNA-directed RNA polymerase alpha subunit
  KO
K03040  DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
Organism
bsca  Bifidobacterium scardovii
Pathway
bsca03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:bsca00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    BBSC_0532
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bsca03021]
    BBSC_0532
   03400 DNA repair and recombination proteins [BR:bsca03400]
    BBSC_0532
Enzymes [BR:bsca01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     BBSC_0532
Transcription machinery [BR:bsca03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     BBSC_0532
DNA repair and recombination proteins [BR:bsca03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      BBSC_0532
SSDB
Motif
Pfam: RNA_pol_A_bac RNA_pol_A_CTD RNA_pol_L
Other DBs
NCBI-ProteinID: BAQ30612
Position
625557..626552
AA seq 331 aa
MLIAQRPTLTEEVLNPQRSRFTIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSVRISGAL
HEFTTLPGVEEDVTEILLNIKGIVLTSEYDEPVVMYLRKSGEGEATAGDITPPAGVTIAN
PELHIASLAEDGELEIEFTVERGRGYVPAQMNKPETAEIGRIPVDSIYSPVLKVSYKVEA
TRVAQRTDFDKLILDVETKAAISPRDAVASAGSTLVELFGLCHELNTQAEGVEVGPAPVA
EETNPEMAVPIEDLNLTQRSYNCLKREGIHTIGELVAHTEQDLLDIRNFGMKSIDEVKDK
LQTLGLSLKASPLGFDTNNLEGGTFYSPEDE
NT seq 996 nt   +upstreamnt  +downstreamnt
gtgcttatcgcacagcgtccgacactgaccgaggaagtcctcaaccctcagcgctcccgt
tttaccatcgagcctcttgagcccggtttcggctatacgcttggcaactcgctgcgccgt
accctgctgagctcgatcccgggtgccgctgtgacttcggtgcgtatctccggtgccctg
cacgagttcaccactctgccgggcgtggaggaggacgttaccgagatcctgctcaacatc
aaaggcatcgtgctcaccagcgaatacgatgagccggttgtcatgtatctgcgcaagagc
ggcgaaggcgaagccaccgcgggtgacatcacccctccggccggcgtgaccatcgccaat
cctgaactgcatatcgcaagtctggctgaggatggcgagctcgagatcgagttcaccgtc
gagcgcggccgcggctacgtgcctgcgcagatgaacaagccggagaccgccgagatcggc
cgtatcccggtcgactcgatctactccccggtgctcaaggtgagctacaaggtcgaggcc
acccgtgtggcgcagcgcaccgatttcgacaagctcatcctggatgtggagaccaaggcc
gccatctcgccgcgcgacgccgtcgcgtccgcgggatccacgctggtggagctcttcggc
ctgtgccacgagctcaacacccaggcggaaggcgtcgaggtcggcccggcccccgtggcc
gaggagaccaaccctgaaatggccgttccgatcgaggatctcaacctcacgcagcgcagc
tacaactgcctgaagcgcgagggtatccacacgatcggcgagctggtcgcccacaccgag
caggacctgctcgacatccgcaatttcggtatgaagtcgatcgacgaggtcaaggacaag
ctgcagaccctgggtctgtcgctcaaggcctccccgctgggcttcgacaccaacaacctc
gaaggcggcaccttctactcgccggaagacgagtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (13)   

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