KEGG T03975: BBSC

Bifidobacterium scardovii: BBSC_1402

Entry

BBSC_1402         CDS       T03975

Name

(GenBank) excinuclease ABC subunit B

K03702

excinuclease ABC subunit B

Organism

bsca Bifidobacterium scardovii

Pathway

bsca03420

Nucleotide excision repair

Brite

KEGG Orthology (KO) [BR:bsca00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    BBSC_1402
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bsca03400]
    BBSC_1402
DNA repair and recombination proteins [BR:bsca03400]
Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     BBSC_1402
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      BBSC_1402

SSDB

Motif

Pfam:

UvrB_inter UvrB Helicase_C ResIII UVR DEAD AAA_22 UB2H AAA_16 AAA_5 ZapA HEM4 AAA_28 DUF87 nSTAND3 AAA_7 Pox_A_type_inc

Other DBs

NCBI-ProteinID:

BAQ31482

Position

complement(1678078..1680189)

AA seq 703 aa
MGFNIERTNKPFVVKSPYRPSGDQPQAIEELATRIENGENDVVLMGATGTGKTATTAWLI
ERLQRPTLIIEPNKTLAAQLCAEFRELMPDNAVSYFVSYYDYYQPEAYIPQTDTYIEKDS
NINDDVERLRHAATANLLTRRDCVVVATVSCIYGLGTPEEYAGRMLFLKEGQQIERDQLL
RQFVAMQYKRNDIAFTRGTFRVRGDTVEIIPVYEELAIRIEFFGDEIDRISTLHPLTGDV
IDHESEVHIFPASHYVAGPERMERALKTIQAELDQRVAELRKQGKELEAQRLTMRTTYDL
EMLSQVGVCSGVENYSRHFDGRAAGTPPHTLLDFFPDDFLLVIDESHVTVPQIGAMYEGD
ASRKRTLVDFGFRLPSAMDNRPLKWPEFLDRVGQTVYLSATPGDYELGLSDGVVEQIIRP
TGLVDPKIEVRPTEGQIDDLLAEIKDRVARDERTLVTTLTKKMAEDLTDYLLERGIKVEY
LHSDVDTLRRVELLRELREGKIDVIVGINLLREGLDLPEVSLVAILDADKEGFLRSYRSL
IQTIGRAARNVSGTVLMYADEMTDAMHKAIDETERRRDKQIAYNKEHGIDPKPLIKKISD
VNDMLAKEDVDTQTLLAGGYRNAGKAGNTHLGVPSLDKDEADKRHEEILKAGLPAQDLAD
LIRQMSEQMHTAAEQLQFELAARLRDEIRDLKKELRQMTEANK

NT seq 2112 nt +upstreamnt +downstreamnt
atgggattcaacatcgagcggacgaacaaacctttcgtcgtcaagtcgccgtatcggccc
tccggtgaccagccgcaggccatcgaggagctcgccacgcgcatcgagaacggcgagaac
gacgtggtgctcatgggcgccaccggcaccggcaagaccgccaccaccgcatggctgatc
gagcggctgcagcggcccacgctcatcatcgagccgaacaagacccttgccgcgcagctg
tgcgccgagttccgcgagctcatgcccgacaacgcggtcagctatttcgtgtcctactac
gactactaccagccggaggcgtacatcccgcagaccgacacctacatcgagaaggactcg
aacatcaacgacgatgtggagcgcctgcgccatgccgccaccgccaacctgctcacgcgg
cgcgactgcgtggtcgtggccaccgtctcgtgcatctatggcctgggcacgccggaggaa
tacgcggggcgcatgctcttcctcaaggagggtcagcagatcgagcgcgaccagctgctg
cgccagttcgtcgccatgcagtacaagcgcaacgacatcgcgttcacgcgcggcaccttc
cgcgtgcgcggcgacaccgtcgagatcatccccgtatacgaggagttggcgatccgcatc
gagttcttcggcgacgagatcgaccgcatctccaccctgcacccgctgacgggcgatgtg
atcgaccatgagagcgaagtgcacatcttcccggcctcgcactatgtggccgggccggag
cgcatggaacgcgcgctgaagaccatccaggccgagctggaccagcgcgtggccgaactg
cgcaagcagggcaaggagctggaggcgcagcgcctgaccatgcgcaccacctacgatctg
gagatgctctcccaggtgggcgtgtgctcgggcgtggagaactattcgcggcacttcgac
ggtcgtgcggccggtacaccgccgcatacgctgctcgacttcttccccgacgattttctg
ttggtcatcgacgagtcccatgtcaccgtgccccagatcggcgcgatgtacgagggggat
gcctcccgaaagcgcacgctcgtcgacttcggcttccggctgccctcggcgatggacaac
cggccgctcaaatggccggaattcctcgaccgcgtcgggcagaccgtctacctgtccgcc
acgcccggcgactatgagctgggcctgtccgacggggtcgtcgagcagatcatcaggccg
accggtctggtcgatccgaagatcgaggtacgcccgaccgaggggcagatcgacgatctg
ctcgccgagatcaaggaccgcgtcgccagggacgagcgcacgctggtcaccacgctcacc
aagaagatggccgaggatctgaccgactatctgctcgagcgaggcatcaaggtcgagtac
ctgcattccgatgtcgacacgctgcggcgcgtcgagctgctgcgcgagctgcgcgagggc
aagatcgacgtgatcgtgggcatcaacctgctgcgcgagggcctggatctgccggaggtg
tcgctggtggcgatcctcgacgccgacaaggagggcttcctgcgctcctaccgttcgctc
atccagacgatcggccgcgccgcccgcaacgtgtcgggcaccgtgctcatgtacgccgac
gagatgaccgacgcgatgcacaaggccatcgacgagaccgaacgccgccgcgacaagcag
atcgcctacaacaaggagcacggcatcgaccccaagccgctgatcaaaaagatcagcgac
gtcaacgacatgctcgccaaggaggacgtcgacacgcagaccctgctggccggcggctac
cgcaacgccggcaaggcgggcaacacgcatcttggcgtgccgagcctcgacaaggacgag
gccgacaagcggcacgaggagatcctcaaggccggtctgcccgcacaggatctggccgat
ctgatccgccagatgagcgagcagatgcacaccgccgccgaacagctccagttcgagctc
gccgcccgcctgcgcgacgagatccgagacctcaaaaaagaactccgtcaaatgacggag
gcgaataagtga

All links

Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (17)   
   Pfam (17)   
All databases (24)   

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