KEGG   Burkholderia seminalis: WJ12_01395
Entry
WJ12_01395        CDS       T04851                                 
Name
(GenBank) ATP-dependent DNA helicase RecQ
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
bsem  Burkholderia seminalis
Pathway
bsem03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bsem00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    WJ12_01395
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bsem03019]
    WJ12_01395
   03400 DNA repair and recombination proteins [BR:bsem03400]
    WJ12_01395
Enzymes [BR:bsem01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     WJ12_01395
Messenger RNA biogenesis [BR:bsem03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     WJ12_01395
DNA repair and recombination proteins [BR:bsem03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      WJ12_01395
SSDB
Motif
Pfam: RQC DEAD HRDC RecQ_Zn_bind Helicase_C ResIII
Other DBs
NCBI-ProteinID: AOJ23587
Position
1:324184..326031
AA seq 615 aa
MSRALEILDEVFGYSAFRGQQGEIVEHVAGGGDCLVLMPTGGGKSLCYQIPALLRRDAGQ
GAGIVVSPLIALMQDQVAALREVGVRAAYLNSTLSGAEAAATERALREGEIDLLYVAPER
LMTGRFLDLLERAKIGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFPSVPRIALTATAD
AITRDEIIHRLALDDARVFVSSFDRPNIRYRIVEKDNARAQLLDFIRAEHTNADGTTDAG
VVYCLSRRKVEETAEWLKAQGVRALPYHAGMEFEVRQKHQEMFQREEGIVMCATIAFGMG
IDKPDVRFVAHLDLPKSVEGYYQETGRAGRDGMPANAWMAYGLGDVVQQRKMIDESDADD
AHKRVQTSKLDALLGLCETISCRRVRLLNYFGEESRPCGNCDTCLEPPASWDATREAQMA
LSCVFRAQRASGFNFGSSHLIEILRGGRTEKVLQRGHDQLSTFGIGAALSEPEWRAIFRQ
LVAYGYLAVDHGGFGALMLTEAAKAVLKNEEKVTLRRYVKPQRTRQSSSRSGTRVDPTAG
MGTRERARWDALRAWRAETAKTDGVPAYVIFHDATLAEIARNAPESIDDLRHIPGMGVRK
LERFGDEIIDVVESA
NT seq 1848 nt   +upstreamnt  +downstreamnt
atgtcccgcgccctcgaaatcctcgacgaagtctttggttattccgcctttcgcggccag
cagggcgagatcgtcgagcacgtcgccggcggcggcgattgtctcgtgctgatgcccacg
ggcggcggcaagtcgttgtgctaccagatcccggcgctgctgcgccgcgacgccgggcag
ggcgccggcatcgtcgtgtcgccgttgatcgcgctgatgcaggaccaggtcgccgcgctg
cgcgaagtcggcgtgcgcgcggcctacctgaattcgacgctgtcgggcgccgaggccgcg
gccaccgagcgcgcgctgcgcgaaggcgagatcgacctgctgtacgtcgcgccggagcgg
ctgatgaccgggcgcttcctcgacctgctcgaacgcgcgaagatcggcctgttcgcgatc
gacgaagcgcactgcgtgtcgcaatgggggcacgatttccgtccggaatacatccagctg
tcggtgcttcacgagcgcttcccgtcggtgccgcgcatcgcgctgacggccacggccgac
gcgatcacgcgcgacgagatcatccatcgtctcgcgctcgacgacgcacgcgtgttcgta
tcgagcttcgatcgccccaacatccgctaccggatcgtcgagaaggacaacgcgcgcgcg
cagctgctcgacttcatccgcgcggagcacacgaatgccgacggcacgaccgacgccggc
gtcgtctattgcctgtcgcgtcgcaaggtcgaggaaacggccgaatggctgaaggcgcaa
ggcgtgcgggcgctgccctatcacgccgggatggagttcgaggtgcggcagaagcaccag
gaaatgttccagcgcgaagagggtatcgtgatgtgcgcgacgatcgcgttcggcatgggc
atcgacaagcccgacgtgcgcttcgtcgcgcacctggatctgccgaagagcgtcgaaggc
tactaccaggaaacgggccgcgcgggccgcgacgggatgcccgcgaatgcatggatggcg
tacggcctcggcgacgtcgtccagcagcgcaagatgatcgacgaatcggatgcggacgac
gcacacaagcgcgtgcagacgtcgaagctcgacgcgctgctcgggctgtgcgagacgatt
tcgtgccgccgcgtgcggttgctgaactacttcggcgaagagagccggccgtgcggcaac
tgcgacacctgcctcgagccgcccgcgtcgtgggacgccacgcgtgaggcgcagatggcg
ttgtcgtgcgtgttccgcgcgcagcgcgcgagcggtttcaatttcggctcgagccacctg
atcgagatcctgcgcggcgggcgcaccgagaaggtgttgcagcgcggccatgaccagctc
agcacgttcgggatcggcgcggcgctgtccgaaccggaatggcgcgcgattttcaggcag
ctcgtcgcgtacggctacctggcggtcgaccatggcggctttggcgcgctgatgctgacg
gaggccgcgaaggccgtgctgaagaacgaggagaaggtcacgctgcgccgctacgtgaag
ccgcagcgcacgcgccagtcgtcgagccgcagcggcacgcgcgtcgacccgaccgccggc
atgggcacgcgcgagcgcgcacggtgggacgcgttgcgcgcgtggcgcgcggaaaccgcg
aagaccgacggcgtgccggcctacgtgatcttccacgatgcgacgctcgcggaaatcgcg
cgcaacgcaccggagtcgatcgacgacctgcgccacatccccggcatgggcgtacgcaag
ctcgaacgcttcggcgacgagatcatcgacgtggtcgaatcggcctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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