KEGG   Bacillus subtilis BSn5: BSn5_15215
Entry
BSn5_15215        CDS       T01417                                 
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
bsn  Bacillus subtilis BSn5
Pathway
bsn03030  DNA replication
bsn03410  Base excision repair
bsn03420  Nucleotide excision repair
bsn03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:bsn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BSn5_15215 (ligA)
   03410 Base excision repair
    BSn5_15215 (ligA)
   03420 Nucleotide excision repair
    BSn5_15215 (ligA)
   03430 Mismatch repair
    BSn5_15215 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bsn03032]
    BSn5_15215 (ligA)
   03400 DNA repair and recombination proteins [BR:bsn03400]
    BSn5_15215 (ligA)
Enzymes [BR:bsn01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     BSn5_15215 (ligA)
DNA replication proteins [BR:bsn03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     BSn5_15215 (ligA)
DNA repair and recombination proteins [BR:bsn03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     BSn5_15215 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     BSn5_15215 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     BSn5_15215 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      BSn5_15215 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD HHH PTCB-BRCT BRCT_2 zf-NADH-PPase 5_3_exonuc RNA_pol_A_CTD HHH_3 zf-IS66 HHH_8 HNOB zf-tcix Zn-ribbon_8
Other DBs
NCBI-ProteinID: ADV95651
Position
2944840..2946846
AA seq 668 aa
MDKETAKQRAEELRRTINKYSYEYYTLDEPSVPDAEYDRLMQELIAIEEEHPDLRTPDSP
TQRVGGAVLEAFQKVTHGTPMLSLGNAFNADDLRDFDRRVRQSVGDDVAYNVELKIDGLA
VSLRYEDGYFVRGATRGDGTTGEDITENLKTIRNIPLKMNRELSIEVRGEAYMPKRSFEA
LNEERIKNEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMGVETQSQGLD
FLDELGFKTNQERKKCGSIEEVITLIDELQAKRADLPYEIDGIVIKVDSLDQQEELGFTA
KSPRWAIAYKFPAEEVVTKLLDIELNVGRTGVITPTAILEPVKVAGTTVSRASLHNEDLI
KEKDIRILDKVVVKKAGDIIPEVVNVLVEQRTGEEKEFSMPTECPECGSELVRIEGEVAL
RCINPECPAQIREGLIHFVSRNAMNIDGLGERVITQLFEENLVRNVADLYKLTKERVIQL
ERMGEKSTENLISSIQKSKENSLERLLFGLGIRFIGSKAAKTLAMHFESLENLKKASKEE
LLAVDEIGEKMADAVITYFHKEEMLELLNELQELGVNTLYKGPKKVKAEDSDSYFAGKTI
VLTGKLEELSRNEAKAQIEALGGKLTGSVSKNTDLVIAGEAAGSKLTKAQELNIEVWNEE
QLMGELKK
NT seq 2007 nt   +upstreamnt  +downstreamnt
atggacaaagaaacagcgaagcagcgggcagaagaactgcgccgcaccatcaacaagtat
agctatgaatattacaccctagatgaaccgagcgtccctgatgcggaatatgacagattg
atgcaggagctgatcgcgatcgaggaggagcatccagacctcagaacgcctgactctcct
acgcagcgcgtcggcggagccgtgcttgaagcgtttcagaaagtcacccacggcacaccg
atgctcagtctgggcaatgcctttaatgctgatgatcttcgtgatttcgaccgccgtgtg
cgccagtccgtcggcgacgatgtggcgtataatgtggagctgaaaatagacggtcttgct
gtttctctccgttatgaagacggctattttgtcagaggggccacaagaggtgacggaacg
actggagaggatattacggagaacctgaagacgatccgcaatatcccccttaaaatgaac
cgtgagctgtcaatcgaagtgcgcggagaggcgtatatgccgaaacgttcgtttgaagca
ctcaatgaggaacggattaaaaatgaggaagaaccgttcgccaatccgcgaaatgccgcg
gcgggatctctcagacagctcgatccgaaaattgcagcgaaacgaaacctcgatatcttc
gtctacagtatagcggagcttgacgagatgggtgtagagacgcaaagccaagggcttgat
tttctcgacgaactcggatttaaaacgaatcaggaacgaaaaaaatgcggcagcatagaa
gaagtcattacgctgatcgatgagcttcaggcgaagcgcgcggacctgccgtacgaaata
gacggcattgtcattaaagtcgattctctcgatcaacaggaggagctcggttttacggcg
aaaagcccgcgctgggccatcgcgtataagtttcctgctgaagaggtcgtgacgaagctt
ctcgatatcgaattaaatgtcggcagaacgggtgtgatcacgccgaccgcgattcttgag
ccggtaaaagttgccggcacaacggtctcaagagcatcccttcataacgaagatttaatt
aaagagaaggacattcggattttggataaggttgtcgtcaaaaaagcgggcgatatcatc
ccggaagttgtgaatgtcctcgttgaacagcgaacaggagaagaaaaggaattcagcatg
ccgacggaatgtcctgaatgcggcagtgagctcgtccggatcgaaggagaagtggcgctt
cgctgcattaaccctgaatgtccggcgcaaatccgggaagggctgatccatttcgtttcc
cggaatgccatgaacattgacgggctcggcgaacgagtgattacacagctgtttgaggaa
aaccttgtccgcaatgtggcagatttatataagctgacgaaggaacgagtcatccagctc
gagcgcatgggtgaaaagtccactgaaaacctgatcagctccatccaaaaatcaaaagaa
aattcgttagagcgcctgctgtttgggcttggcatccgttttatcggatcaaaggccgca
aagacgctcgccatgcattttgaaagcttggagaacctgaaaaaagcctctaaagaggaa
cttctcgcggtagatgaaatcggtgaaaaaatggctgatgctgtgatcacctattttcat
aaagaagaaatgcttgaactcttgaatgaacttcaggagctgggcgtaaacacgctctac
aaaggcccgaaaaaagtaaaagcagaggacagcgattcttactttgccggtaaaacaatt
gttctgacaggaaagctggaagagctgtcaagaaacgaagccaaagcgcaaatcgaagcg
ctgggcggaaagctgactggaagcgtcagcaaaaacacagacttagtcatcgccggagaa
gcggcgggaagcaagctgacaaaagcacaagagctgaacattgaagtgtggaatgaagaa
cagttaatgggagagctaaagaaataa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (18)   
   Pfam (18)   
All databases (37)   

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