KEGG   Bacillus subtilis subsp. natto BEST195: BSNT_02251Help
Entry
BSNT_02251        CDS       T02607                                 

Gene name
ligD
Definition
ATP-dependent DNA ligase
Orthology
K01971  
DNA ligase (ATP) [EC:6.5.1.1]
Organism
bso  Bacillus subtilis subsp. natto BEST195
Pathway
Base excision repair
Nucleotide excision repair
Mismatch repair
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:bso00001]
 Genetic Information Processing
  Replication and repair
   03410 Base excision repair
    BSNT_02251 (ligD)
   03420 Nucleotide excision repair
    BSNT_02251 (ligD)
   03430 Mismatch repair
    BSNT_02251 (ligD)
   03450 Non-homologous end-joining
    BSNT_02251 (ligD)
Enzymes [BR:bso01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BSNT_02251 (ligD)
DNA repair and recombination proteins [BR:bso03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      BSNT_02251 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-GI: 
NCBI-GeneID: 
UniProt: 
Position
complement(1415563..1417260)
Genome map
AA seq 565 aa AA seqDB search
MELSSTFPEITQFAKTAFQHLEKELPLTLDGEIVCLVNPCRADFEHLQVRGRLKRPDKIQ
ESANARPCCFLAFDLLERSGEDVTLLSYLDRKKSLRELISAAKLPASPDPYAKETIQSIP
CYDHFDQLWEMVIKYDGEGIVAKKTNSKWLEKKRSSDWLKYKNFKQAYVCITGFNPNNGF
LTVSVLKNGIMTPIASVSHGMRDEEKSAIREIMEQHGHQTPSGEFKLEPSICAAVQYLTI
LHGTLREVSFIGFEFQMDWTECTYAQVIRHSKPVHPKLQFTSLDKIIFEKNKKTKEDFIQ
YMIEVSDYLLPFLKNRAVTVIRYPHGSRSESFFQKNKPDYAPDFVQSFYDGSHEHIVCED
MSTLLWLCNQLALEFHVPFQTIKSRRPAEIVIDLDPPSRDDFLMAVQAANELKRLLDSFG
ITSYPKLSGNKGIQLYIPLSPEAFTYEETRQFTQLIAEYCTNAFPELFTTERLIKNRHGK
LYLDYLQHAEGKTIICPYSTRGNELGTVAAPLYWHEVQSSLTPALFTIDTVIDRIKKQGC
PFFDFYRNPQDEPLSAILHQLKKKS
NT seq 1698 nt NT seq  +upstreamnt  +downstreamnt
gtggagctcagcagcaccttccctgaaatcacacaattcgccaaaactgcctttcagcac
ctagaaaaagagcttccgctgacacttgacggtgaaatcgtatgtttggtgaatccctgt
cgtgcagattttgaacaccttcaagtgcgggggcgtttgaaaaggccagacaagattcag
gaatcggcaaacgcgcggccgtgctgctttctcgcctttgatttgttagagcgaagcgga
gaagatgtaacgcttctttcgtatttggaccgcaaaaaatcgctgcgtgaactcatatcc
gcagcaaagcttcctgcatctccagatccttacgcaaaagaaaccattcaatccattccc
tgttatgatcattttgatcaactctgggagatggtaataaaatatgacggagaaggaatt
gtagcgaagaaaacaaacagcaaatggcttgaaaagaagcggtcgtccgattggctcaaa
tataaaaactttaaacaagcttatgtttgcataacagggttcaaccctaacaacgggttt
ctgacggtatcggtgttaaaaaacggaataatgacaccgattgcctctgtctcgcacgga
atgcgcgatgaggaaaaaagcgctatacgcgagattatggaacagcacggacatcaaaca
ccctcaggcgagtttaagcttgaaccttcgatttgtgcagctgttcaatacttaacaatt
ctccatggcacattaagagaggtatcgtttatcggtttcgaattccaaatggactggacc
gaatgcacgtatgcgcaagtcatacgacactccaaaccggttcacccaaagctccagttc
acaagcctggataaaatcatatttgaaaagaataaaaaaacaaaagaagattttattcag
tatatgattgaagtcagtgactacctgctcccatttctgaaaaaccgggctgtcaccgtc
atccgctatccgcatggatctaggagcgaatcatttttccaaaaaaacaaaccggactat
gcgccggattttgttcaatctttctatgatggaagccatgaacatattgtctgtgaggat
atgtctacattgctatggctttgcaaccagcttgctttggagtttcacgttccttttcaa
accattaaaagcaggcgtccggctgagattgtcattgatttagacccgccttcgcgagat
gactttcttatggccgtgcaggccgcaaatgaactgaagcggctgttggattcctttggc
atcacatcgtacccgaagctgtccggcaacaaaggcatccagctttatattcccttgtct
cccgaggcatttacgtatgaagaaacacgccaatttacgcagctgatcgcagagtactgc
accaatgcatttcccgagctctttaccactgaacgcttgattaaaaacagacacggcaaa
ttgtatcttgattatttgcagcatgcagaaggaaaaacgattatctgtccctattcgacg
agaggaaatgagcttgggactgttgcagccccgctctactggcatgaggtgcaatcatct
ttaacacccgctctgtttacaattgatacggtcatcgatcgaattaagaagcagggctgc
ccattttttgatttttaccgcaacccgcaagacgaaccgcttagcgccatattgcatcag
ttgaagaaaaagagctga

DBGET integrated database retrieval system