KEGG   Bacillus subtilis subsp. spizizenii W23: BSUW23_16475
Entry
BSUW23_16475      CDS       T01302                                 
Symbol
rnr
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
bss  Bacillus subtilis subsp. spizizenii W23
Pathway
bss03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bss00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BSUW23_16475 (rnr)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bss03019]
    BSUW23_16475 (rnr)
   03016 Transfer RNA biogenesis [BR:bss03016]
    BSUW23_16475 (rnr)
Enzymes [BR:bss01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     BSUW23_16475 (rnr)
Messenger RNA biogenesis [BR:bss03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     BSUW23_16475 (rnr)
Transfer RNA biogenesis [BR:bss03016]
 Prokaryotic type
  tRNA degradation factors
   BSUW23_16475 (rnr)
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 TFIIE_beta CSN8_PSD8_EIF3K OB_Dis3 MarR_2 CsrA
Other DBs
NCBI-ProteinID: ADM39330
UniProt: E0U268
Position
complement(3245126..3247465)
AA seq 779 aa
MEKEAFMDKLLSFMKEEAYKPLTVQELEEMLNITEAEEFKELVKALVALEEKGLIVRTRS
DRYGIPEKMNLIKGKISAHAKGFAFLLPEDTSLSDVFIPPNELNTAMNGDIVMVRLNSQS
SGSRQEGTVIRILERAIQRVVGTYTETRNFGFVIPDDKKITSDIFIPKNGKNGAAEGHKV
VVKLTSYPEGRMNAEGEIETILGHKNDPGIDILSVIHKHGLPGDFPADAMEQASSTPDTI
DEKDLKDRRDLRDQVIVTIDGADAKDLDDAVTVTKLDDGSYKLGVHIADVSHYVTENSPI
DKEALERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMTINSQGQVTEHEIFQ
SVIKTTERMTYSDVNQILVDDDEELKQKYEPLVPMFKDMERLAQILRDKRMNRGAVDFDF
KEAKVLVDEEGAVKDVVIRERSVAEKLIEEFMLVANETVAEHFHWMNVPFIYRIHEEPNA
EKLQKFLEFVTTFGYVVKGTAGDIHPRALQSILDAVRDRPEETVISTVMLRSMKQAKYDP
QSLGHFGLSTEFYTHFTSPIRRYPDLIVHRLIRTYLINGKVDEATQEKWAERLPDIAEHT
STMERRAVDAERETDDLKKAEYMLDKIGEEFDGMISSVTNFGMFVELPNTIEGLVHVSFM
TDDYYRFDEQHFAMIGERTGNVFRIGDEITVKVVDVNKDERNIDFEIVGMKGSPRRPREL
DSSRSRKRGKPARKRVQSTNTPVSPAPSEEKGEWFTKPKKKKKKRGFQNAPKQKRKKKK
NT seq 2340 nt   +upstreamnt  +downstreamnt
atggaaaaagaagcatttatggataagcttctctcgtttatgaaggaagaggcatacaag
cctctgactgttcaggaacttgaggagatgttaaatattacggaagccgaggagtttaaa
gagctcgtcaaagcgttagtcgccttggaagaaaaaggacttatcgtacggacgagaagc
gaccgctatggcattccggagaagatgaatttaataaaaggaaagatttcagcacatgca
aaaggatttgcctttttgctgcctgaggatacgtcgttaagcgatgtgtttattccgcct
aatgagctgaatacggcaatgaacggcgatatcgtcatggttcgtctgaattcacagtca
agcggctccagacaggaaggaaccgtcatccgcattttagaaagagcgattcagcgggtt
gtcggtacgtatacagaaacaagaaacttcggctttgtcattccggacgacaaaaaaatc
acaagcgacatctttatcccgaaaaacgggaaaaacggtgctgcggaaggacacaaggtt
gttgtcaagctgacgagctatccagaaggccgcatgaacgcagagggcgagattgaaacc
attctcggccacaaaaatgatccggggattgatattttatcagtcattcataagcatggc
ctgccgggagattttcctgctgatgcgatggaacaggcatcaagtacgcctgacacaatt
gatgaaaaagatctgaaagaccgccgtgatctccgtgaccaggtgattgtcaccattgat
ggtgcggacgcgaaggatttggatgatgcagttaccgtgacgaagcttgatgacggaagc
tacaagcttggcgttcacattgctgatgtcagccattacgtaaccgaaaattcgccgatt
gacaaagaagcgctagaaagaggaacgagtgtgtatttggttgaccgtgtcatcccaatg
ataccgcacagactatcaaacggcatttgttccttaaatccaaaggttgaccgcctgaca
ctctcttgtgaaatgacaattaacagtcagggacaggtgacagagcacgagatcttccaa
agtgtcatcaaaacaacggaaagaatgacgtattctgatgtgaatcaaattcttgttgac
gatgatgaagagctgaaacaaaaatacgagcctcttgttccaatgttcaaagacatggag
cgtctggctcaaattctgcgcgataagcggatgaaccgcggcgccgttgattttgatttc
aaagaagcaaaggtgcttgtcgatgaagaaggggcggttaaagacgttgtcatcagagaa
cgctctgtcgccgagaagctgattgaagaatttatgcttgtggcgaacgaaacagtagcg
gagcatttccattggatgaacgtcccgtttatataccggattcacgaagagccgaatgct
gaaaagctgcaaaagtttttagagtttgtaacgacatttggctatgtggtgaaaggaacg
gcgggagatattcatccgcgcgcgctgcaaagcattctggacgctgtgcgtgacagacct
gaagaaacagttatatctactgtcatgctccgttcgatgaaacaggcgaaatacgacccg
caaagcttggggcactttggtctgtcaacggaattctatacgcatttcacatcaccgatc
cgccgttatccggacttaatcgtccaccgtctgatcagaacgtatttaatcaacggcaaa
gtcgatgaagcgacacaggaaaagtgggctgaacgcctgccggatatcgccgaacataca
tcaacgatggagcggcgtgccgttgacgccgagcgtgaaacggatgatctgaaaaaagcg
gaatacatgcttgataaaatcggtgaagagtttgacggcatgatcagctctgtgacaaac
ttcggaatgtttgtcgagctgccgaatacaatcgaaggactcgtccacgtcagctttatg
acggatgactactaccgctttgacgaacagcattttgcgatgatcggtgagcggacaggc
aacgtcttccgtatcggggatgaaatcacagtcaaggtcgtcgatgtcaacaaagacgag
cgcaacatcgactttgaaattgtcggcatgaagggctctccgcggcgtccgagagaactg
gacagcagccggagcagaaaacgcggaaagcctgccagaaaacgcgtccaaagcaccaat
acacctgtttctccagctccgtctgaggaaaaaggtgagtggtttactaagccgaagaag
aaaaagaaaaaacgcggcttccaaaacgcaccgaaacagaaacggaaaaagaagaaatag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (20)   

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