KEGG T01008: 407107

Bos taurus (cow): 407107

Entry

407107 CDS T01008

Gene name

COL4A4

Definition

collagen, type IV, alpha 4

Orthology

K06237

collagen, type IV, alpha

Organism

bta Bos taurus (cow)

Pathway

bta04151	PI3K-Akt signaling pathway
bta04510	Focal adhesion
bta04512	ECM-receptor interaction
bta04974	Protein digestion and absorption
bta05146	Amoebiasis
bta05200	Pathways in cancer
bta05222	Small cell lung cancer

Class

Environmental Information Processing; Signal transduction; PI3K-Akt signaling pathway [PATH:bta04151]
Environmental Information Processing; Signaling molecules and interaction; ECM-receptor interaction [PATH:bta04512]
Cellular Processes; Cell communication; Focal adhesion [PATH:bta04510]
Organismal Systems; Digestive system; Protein digestion and absorption [PATH:bta04974]
Human Diseases; Cancers; Pathways in cancer [PATH:bta05200]
Human Diseases; Cancers; Small cell lung cancer [PATH:bta05222]
Human Diseases; Infectious diseases; Amoebiasis [PATH:bta05146]

SSDB

Motif

Pfam:

Collagen C4

Other DBs

NCBI-GI:

NCBI-GeneID:

BGD-bta:

Ensembl:

Position

AA seq 1635 aa
MALVRRPFKCNKLLATNSWSLILILFSVQYAYGGGKKFIGLCGGRDCSLCQCFPEKGSRF
LGGREELCVEHRSTSALPGTDGSLMMAVRRWRRSLARNLGAWLVRNREELAREPGAAAAT
VGRRVNGSDDSASGWPLGEKGMKGDSGRPGAAGDVGDKGPTGVPGFPGLDGIPGHPGPPG
SRGRPGIDGYNGSRGDPGIPGERGALGPRGPPGLPGEKGEKGNSVFILGATKGMQGDRGD
PGPPGSPGSRGVRGPAGPVGYPGEPGLAGPPGPPGSPGLKGNPGVGVKGQMGDPGEVGQQ
GSPGPTLLVQPPDSGLYKGEKGIKGMPGMTGLPGPPGPRGEPGIGRKGEKGIPGFPGPRG
DPGSYGSPGFPGLKGEPGLFGDPGSFGFLGPKGDPGDRGHPGPPGVLVTPSLPLKGPPGD
PGRPGRYGETGAVGPRGPPGAPGRPGEACPGMTGPPGPRGFPGHPGFPGAAGVPGRADSA
PGKPGNQGPTGLPGVPGLPGPPGSDAVYCTVGQPGPQGTKGKVGPPGRRGSKGEKGNSGL
CACQPGPMGPSGPPGPPGRQGSKGDLGLPGWLGEKGSPGPPGAKGSPGPPGKPGASGLPG
SKGEKGDMVVSRVKGHKGERGPDGPPGLPGQQGQHGRDGYAGEKGDTGPPGDHEDAAPGD
KGPPGPPGPPGRAGPRGPPGLGFPGPPGDRGQPGAPGYPGNRGPDGRKGRKGDTIPCNVT
YPGRPGPPGFDGPPGPKGLPGHRGAPGLRCLDGQKGQRGKPGISERPGPPGFRGDIGEPG
LGGEKGSSPVGPPGTPGSPGVNGQKGPPGDPAIGYPGLPGKSGLPGAPGSKGLRGDAGRP
GTAGPAGMPGFPGLQGPKGREGNAGFPGIPGPPGHSCERGAPGIPGQPGLPGAPGSPGAP
GWKGQRGDMGPLGPAGMKGLPGVPGWPGADGTPGLPGVPGPTGDDGLPGLPGPKGPQGLP
GFLGFPGERGKPGQDGHPGRKGEHGEKGWPGFLGDRGLKGVKGARGPPGYEGETDIISKK
GETGEPGPSGDGGFPGENGDKGHPGMQGRRGEPGSHGPPGFHPGEPGRNGQPGLPGPPGP
PGSPGLRGNIGFPGFPGDQGEPGSPGCPGPSGMDGTRGPKGDKGESASQFGLPGPKGEPG
GPGYPGRLGASGEQGLPGAQGPGGPPGRPGPPGLSGPTGCPGSPGGPGLQGPPGEVGDPG
PRGVLGDPGAPGLPGIKGVPGPPGPPGSVDLLKGEPGDCGLPGPPGLPGPPGPPGHKGFP
GCDGKHGQKGPMGFPGPQGPPGSPGPPGDKGLPGPPGRRGPLGPPGSRGEPGPPADLDAC
PRIPGLPGVPGPRGPEGTMGLPGMRGPPGPGCKGEPGLDGRRGEDGLPGSPGPPGHKGDM
GEAGCPGAPGPPGPMGDPGPIGFGPGYLSGFLLVLHSQTDGEPTCPMGMPRLWTGYSLLY
LEGQERAHNQDLGLAGSCLPIFSTLPFAYCNIHQVCHYARRNDRSYWLASTAPLPMTPLS
EDEIRPYISRCAVCEAPAQAVAVHSQDQSIPPCPRAWRSLWIGYSFLMHTGAGDQGGGQA
LMSPGSCLEDFRAAPFLECQGRQGTCHFFANKYSFWLTTVRPDLQFSSAPLPDTLKESHA
QRQKISRCQVCVKHS

NT seq 4908 nt +upstreamnt +downstreamnt
atggcactggtaaggcgtcctttcaagtgcaacaagctcttggccaccaattcctggtca
ctcatacttattttgttttctgtacaatatgcatatgggggtggaaagaagtttattggt
ctctgtggaggaagagattgctctctttgccagtgctttcctgaaaagggatctcggttt
ctgggtggtcgagaagagctgtgtgtggaacaccggtcaacctctgcccttcctggcaca
gatggatccctgatgatggctgtgaggcgctggcgacgttctctagctaggaatttggga
gcgtggcttgtgcgtaaccgggaagagctggcccgagagcccggtgcggctgcagccaca
gtggggaggcgcgtgaatgggtctgatgactcggcgtccggctggcctttgggggagaaa
gggatgaaaggtgacagtggccgtcctggagcagcaggtgacgtaggtgacaagggtcca
accggagttcctggatttccaggtctggatgggatacctgggcacccagggcctcctgga
tccagaggcagacctggcatagatggctacaatggctcaagaggtgatccagggattcca
ggagaaagaggagctcttggcccacgagggcccccaggccttcctggagaaaaaggagaa
aaaggaaattcagtgttcattttaggtgccactaaaggtatgcagggcgacagaggggac
ccaggacctcccggctcaccaggatcaaggggagtgagaggcccagcaggcccagtgggg
tacccaggagagcccgggttagcaggacctccaggcccccctgggagtccaggcttaaag
ggtaatcctggcgtgggagtaaaggggcaaatgggagacccgggtgaggttggccaacaa
ggttctccggggcccactctgttggtgcagccacctgattctggtctctataaaggagaa
aagggtattaaaggaatgcctggaatgactggacttcctggaccaccgggacccagggga
gagcctggtattgggagaaaaggagagaaagggattcctgggtttccaggacctcggggg
gaccctggttcctatggatctccaggttttccaggattaaagggggaaccaggactgttt
ggagatcctgggtcatttggatttcttggcccaaagggagatcctggagaccgagggcac
ccaggaccaccaggggttttggtaactccatctcttccactcaaaggccctccaggggat
ccagggcgccctggccgctatggagaaacaggggctgttggaccacgtggtcctcctggt
gccccaggtagaccaggggaagcctgtccaggcatgacgggacctcctgggccacgagga
tttcctggtcacccaggatttccaggggcagctggggttcctggaagagctgattctgct
ccaggcaaaccaggcaaccagggaccaactgggctgcctggagtgccgggactgccggga
cctccgggatcagatgctgtatattgtactgttgggcaacccggaccacaaggaacaaaa
ggcaaagtgggtcctccaggaagacgaggctccaaaggagaaaaaggcaactcagggctc
tgtgcctgccagcctggtcccatgggcccatcaggccctccagggcctcctgggaggcaa
gggagtaagggagacttggggctccctgggtggcttggagaaaaaggttccccaggccct
cctggtgccaaaggatctccagggccaccgggaaaacctggtgcctcaggactacctggc
agcaaaggagaaaaaggtgacatggttgtatcaagagtgaaaggacacaaaggagaaaga
gggcctgatgggccccctggacttccagggcagcagggacaacacggtcgagatggatat
gctggagaaaagggggacacagggccgcctggtgatcacgaggatgcagccccaggtgat
aaagggcctcctggaccgccagggccccctggcagagcgggacctagggggcccccaggc
ctgggatttcctggccctccaggagacagagggcaaccaggagctccaggctacccaggc
aacaggggtcctgatggtcggaagggtcggaaaggtgatacaattccttgtaacgtaaca
taccctgggaggccaggccctccaggttttgatggtcctccaggtccaaagggacttcca
ggtcatcggggtgctcctgggctgaggtgtttggatggacagaagggtcaacgtggcaaa
ccaggaatctcagaaagacctggtccacctggttttcgtggtgatataggagaaccaggt
ttgggaggtgaaaaggggtcctcgcctgttgggcccccaggcactccaggttcacctgga
gtgaatggtcagaaaggacccccaggagatcctgctatcggctacccaggactcccggga
aagagcggtcttccaggagcaccagggtccaaaggactcagaggcgatgccgggcgtcca
gggaccgcagggccagctggcatgcccggatttccgggtctccaaggtcccaaaggccga
gagggaaatgctgggtttccagggatcccaggcccacctggtcactcctgtgaaagaggt
gctccagggataccagggcaaccggggctccctggggctccaggcagtccaggtgcccca
ggttggaaaggacagcgaggggacatgggacctctgggacctgctggaatgaagggcctt
cctggagtcccaggatggccgggggcagatggaaccccaggtcttccaggggtcccaggc
cccactggagacgatgggctacctggtcttccaggcccaaagggaccccaggggctgcct
ggcttcctgggttttccaggagagagaggaaaacctggtcaggatggacaccctggcaga
aagggagaacatggagagaagggttggcctggcttcctgggagaccgaggattgaaaggt
gtcaaaggagcaagaggacccccgggatatgaaggagaaacggatattatttccaagaag
ggggaaactggagaacctggaccttctggggatggtggattcccaggagaaaatggtgat
aaaggtcatcctgggatgcaaggaaggagaggagagccaggaagccatggaccacctgga
tttcaccctggggagcccggaagaaatggacagccagggcttcctggacccccaggccct
ccaggctcacctgggctgagaggaaacattggttttccaggatttccgggtgaccagggt
gagccaggttctccagggtgcccgggaccttcaggaatggatggtacaagaggacctaaa
ggagacaaaggggaatctgcaagtcagtttggcctgcctggtccaaagggtgagccgggt
ggccctggatatccaggacgtttgggagcatctggagagcagggcttgcccggtgctcaa
ggtcctggaggaccacccggaaggccaggacctcctggcttgtctggaccaacaggatgt
ccaggtagtccaggggggcctgggctgcagggacccccaggagaagtgggggatcctgga
ccaagaggcgtcctgggggacccaggagcaccaggtcttccaggaataaaaggagtaccc
gggcctccaggaccacctgggagtgtcgaccttctgaaaggagaaccaggagactgtggt
ctgccagggcctccaggtctcccgggcccaccaggccctccaggacacaagggcttccca
ggatgtgatggaaaacatggccagaaaggaccaatgggattcccggggccgcaggggcca
cctggaagtcctgggccacctggagacaaaggtttacctggacctccaggcagacgaggg
cctttgggtcctccgggttccagaggtgagcctgggcccccagcagacttggatgcctgc
ccccgaatcccagggcttcctggggtaccaggccccagaggaccggaaggaaccatgggg
cttcctggcatgagaggcccgccgggaccagggtgcaaaggagagcctgggctggatggc
aggaggggtgaggatggcctcccagggtcccctgggcctccgggacataaaggtgacatg
ggagaagcaggctgtccaggagcaccaggccctcctgggcccatgggggatcctgggccc
atagggtttggccctggatacctcagtggcttcctcctggttctccacagtcagacggat
ggagaacccacctgccccatgggcatgcccaggctctggactgggtatagtctgctatac
ctggaaggacaggagagagctcacaatcaagacctcggtctggcgggctcctgcctcccc
atctttagcacgctgcccttcgcctactgcaacatccaccaggtgtgccactatgcccgg
aggaacgacaggtcctactggctggcgagcacagcgcctctgcccatgactccgctctcg
gaggacgagatccgcccgtacatcagccgctgcgcagtgtgcgaggcccccgcccaggcc
gtggcggtgcacagccaagaccagtccatccccccatgtccgcgggcctggaggagcctc
tggatcgggtactccttcctcatgcacacaggcgctggggaccaaggaggcgggcaggcc
ctcatgtccccaggcagctgcctagaggatttcagagccgcaccgttcctggaatgccaa
ggccggcagggaacttgccacttttttgccaacaagtatagtttctggctgacaacagtg
agacctgacttgcagttttcctctgcaccattaccggacaccttgaaagaaagccatgct
caacgccagaaaatcagcaggtgccaggtctgcgtgaagcatagctaa

All links

Pathway (7)   
   KEGG PATHWAY (7)   
Genome (1)   
   KEGG GENOME (1)   
Gene (8)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (2)   
   UniGene (1)   
   BGD-BTA (1)   
   ENSEMBL-BTA (1)   
   OC (1)   
Protein sequence (4)   
   RefSeq(pep) (4)   
DNA sequence (6)   
   RefSeq(nuc) (4)   
   GenBank (1)   
   EMBL (1)   
Protein domain (2)   
   Pfam (2)   
All databases (28)   

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