KEGG   Bos taurus (cow): 540891
Entry
540891            CDS       T01008                                 
Symbol
CNOT4
Name
(RefSeq) CCR4-NOT transcription complex subunit 4
  KO
K10643  CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
Organism
bta  Bos taurus (cow)
Pathway
bta03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bta00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    540891 (CNOT4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:bta03000]
    540891 (CNOT4)
   03019 Messenger RNA biogenesis [BR:bta03019]
    540891 (CNOT4)
   04121 Ubiquitin system [BR:bta04121]
    540891 (CNOT4)
Enzymes [BR:bta01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     540891 (CNOT4)
Transcription factors [BR:bta03000]
 Eukaryotic type
  Zinc finger
   Cys3His zinc factors
    540891 (CNOT4)
Messenger RNA biogenesis [BR:bta03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     540891 (CNOT4)
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     540891 (CNOT4)
Ubiquitin system [BR:bta04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    540891 (CNOT4)
SSDB
Motif
Pfam: zf-RING_4 RRM_1 zf-C3HC4_3 zf-C3HC4_2 zf-RING_2 zf-CCCH_2 Rtf2 Nup35_RRM_2 DZR_2 Torus zf-C3HC4
Other DBs
NCBI-GeneID: 540891
NCBI-ProteinID: NP_001030509
BGD-bta: BT15776
Ensembl: ENSBTAG00000017919
VGNC: 27519
UniProt: Q5BIS2
Position
4:complement(99183187..99336485)
AA seq 642 aa
MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
LQELYKLNPNFLQLSTGSVDKNKNKVTPLQRYDTPIDKPSDSLSIGNGDNSQQISNSDTP
SPPPGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQT
SSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGFDPFDVTRKALADLIE
KELSVQDQPSLSPTSLQNSSSHTTTAKGPGSGFLHPAAPTNANSLNSTFSVLPQRFPQFQ
QHRAVYNSFSFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHNTGLGGIP
IAGIPASSGNSLDSLQDDNPPHWLKSLQALTEMDGPTAPPSQTHHSAPFSTQIPLHRASW
NPYPPPSNPSSFHSPPPGFQTAFRPPSKTPTDLLQSSTLDRH
NT seq 1929 nt   +upstreamnt  +downstreamnt
atgtctcgcagtcctgacgcaaaggaagaccctgtggaatgtcctctttgcatggagccc
ttggagatagatgatatcaactttttcccttgcacctgtggctaccagatttgccgcttt
tgttggcatcgaattcgcactgatgaaaatgggctttgtcctgcatgtagaaagccatat
ccagaagacccagcagtttataaaccactctcccaggaagaactgcaaaggataaagaat
gagaaaaaacagaaacaaaatgagagaaaacagaaaatatcagaaaatcgcaaacatttg
gctagtgtacgtgttgtacaaaaaaacctcgtctttgttgtaggtctgtctcagcgccta
gcagacccagaggttttaaaacgaccagaatattttgggaagtttggtaaaatacataaa
gttgtcatcaataatagcacatcatatgcaggctcacagggtccaagtgccagtgcttat
gtaacctatatacggtcggaagatgctctcagagccatacagtgtgttaacaatgtggtg
gtggatggcagaacacttaaggcatctctaggtacaacaaaatactgcagttacttctta
aagaatatgcagtgtccaaagcctgactgcatgtacctacatgaactgggggatgaggcg
gccagcttcacaaaagaggaaatgcaggcgggtaaacaccaagaatatgaacagaaactc
cttcaggaattatataaattaaaccccaatttccttcaactgtctacgggttcagttgat
aagaataagaacaaagtgacaccactgcagaggtatgatacccctattgacaaaccttct
gattctctcagcatagggaatggtgataattctcagcagatatctaacagtgatacacct
tcaccacctcctggtttatcaaaatccaatccagtcatccccatcagttcatccaatcac
agtgcacggtctccttttgaaggagcagtaactgagtcacagtcgttattctcagataat
tttcgccatcccaaccctatcccaagtgggcttcctcctttccccagctccccacagact
tccagtgactggcctacagcaccagagccacagagcctcttcacatcagaaacaatccca
gtatcatcctctacagactggcaagcagcgtttggctttggttcttctaaacaaccagag
gatgacttgggttttgatccctttgatgtcactcgaaaagccttagcagacttgattgaa
aaggaactgtcagtccaagaccagccttccctttcgcccacatctcttcagaactcctcg
tcacacactacaaccgccaaaggtccaggctctggattcctgcatcctgctgcgcctaca
aatgccaactctctgaatagtaccttttccgtcttgccacagaggttccctcaatttcag
cagcaccgagcggtttataattcattcagttttccaggccaggcagcccgctatccttgg
atggcctttccacgcaatagcatcatgcacttgaaccacacagcaaaccccacctcaaat
agtaatttcttggacttgaatctcccgccacagcacaacacaggtctgggagggatccct
atagcaggtattccagcatcttcaggaaacagtttagactctcttcaagatgacaatcct
ccacactggctaaaatcccttcaggccctcacagagatggacggccccactgcccctccg
tcacaaacccaccacagcgcccccttcagcacacagatccctctgcacagagccagttgg
aatccctaccctcctccttcaaacccttccagctttcactccccacccccaggctttcag
acagccttcagaccccccagcaaaacccccacagatttattacagagttcaacactggac
cgccactag

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (20)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   BGD-BTA (1)   
   OC (1)   
   VGNC (1)   
Protein sequence (11)   
   UniProt (1)   
   RefSeq(pep) (10)   
DNA sequence (14)   
   RefSeq(nuc) (10)   
   GenBank (2)   
   EMBL (2)   
Protein domain (11)   
   Pfam (11)   
All databases (64)   

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