KEGG T01008: 784123

Bos taurus (cow): 784123

Entry

784123 CDS T01008

Gene name

SRRM1

Definition

serine/arginine repetitive matrix 1

Orthology

K13171

serine/arginine repetitive matrix protein 1

Organism

bta Bos taurus (cow)

Pathway

bta03013	RNA transport
bta03015	mRNA surveillance pathway

Module

bta_M00430

Exon junction complex (EJC)

Class

Genetic Information Processing; Translation; RNA transport [PATH:bta03013]
Genetic Information Processing; Translation; mRNA surveillance pathway [PATH:bta03015]

SSDB

Motif

Pfam:

PWI

Other DBs

NCBI-GI:

NCBI-GeneID:

BGD-bta:

UniProt:

Position

AA seq 901 aa
MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEIL
GFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQENIAGIP
SAFLELKKEEIKQRQIEQEKLASMKKQDEDKDKRDKEEKESSREKRERSRSPRRRKSRSP
SPRRRSSPVRRERKRSHSRSPRHRTKSRSPSPAPEKKEKTPELPEPSVKVKEPSVQEATS
TSDILKVPKTEPVLEPKEPSPEKNSKKEKEKTRPRSRSRSKSRSRTRSRSPSHTRPRKRH
RSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSS
SSSRSRSPPKKPPKRTSSPPRKTRRLSPSASPPRRRHRPSPPATPPPKTRHSPTPQQSNR
TRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKGGKMAAADSVQQR
RQYRRQNQQSSSDSGSSSSSEDERPKRSHVKNGEVGRRRRHSPSRSASPSPRKRQKEASP
RGRRRRSPSPPPARRRRSPSPAPPPRRRRSPTPPPRRRTPSPPPRRRSPSPRRYSPPIQR
RYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSSPVTKRRSPSLSSKHRK
GSSPSRSAREARSPQPNKRHSPSPRPRAPQTSSPPPARRGASLSPQRRQSPSPSSRPIRR
VSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPAAKKPPAPPSPVQSQSPSTNWSPA
VPVKKAKSPTPSPSPARNSDPEGGGKKKKKKKDKKHKKDKKHKKHKKHKKEKAVAAAAAA
AVTPAAVAAPTTTSAQEEPEAEPEPKKETESEPEDNLDDLEKHLREKALRSMRKAQVSPQ
S

NT seq 2706 nt +upstreamnt +downstreamnt
atggacgcgggattcttccgcggaacaagtgcagaacaggataatcggttcagcaacaaa
cagaagaagctactgaagcagctgaaattcgcagaatgcctagaaaaaaaggtggacatg
agcaaagtaaatttggaggttataaagccttggataacaaaacgagtaacggaaatcctt
gggtttgaagatgatgttgtgattgagtttatattcaaccagctggaagtgaagaatcca
gattcgaaaatgatgcaaatcaacctgaccgggtttttgaatggaaaaaatgctagagaa
tttatgggagaactgtggcccctactcttaagtgcacaagaaaacatcgctgggatccct
tctgctttcctagaactgaagaaggaagaaataaaacagagacagattgaacaagaaaag
ttggcatctatgaaaaagcaagatgaagacaaggataagagggataaagaagaaaaagaa
agcagcagagaaaaaagggagcggtctcgaagcccaagaagacgcaaatccagatctcct
tcccctagaagacgatcttctcctgtcaggagagagagaaagcgcagtcattctcgatct
ccccgtcacagaaccaaaagccggagtccttcccctgctccagagaagaaggaaaaaact
ccagagctccccgagccatcagtgaaagtaaaagaaccttcagtacaagaggccacttct
acgagtgacatcctgaaagttcccaagactgaaccagtactagagcctaaagaaccttct
ccagagaaaaactccaaaaaggaaaaggaaaagacccgaccaagatctcggtcacgttcc
aagtcaagatccaggacacgttctcgctctccttctcatactagaccaagaaagcgccat
agatctcgatcaagatcatactcacctagaaggcggccaagcccaagaagacggccatct
cctcgaagaagaaccccgccgagacgaatgcctcctccaccaaggcacaggaggagtaga
tctccagtgagacgaagaaggcgttcatcggcatccttgtctgggagtagttcatcatca
tcttcatctcgttcccggtcaccgccaaagaagcctccgaagaggacatccagccctcct
cgaaaaactcgtaggttatctccttcagcaagtcctccgaggcgaaggcataggccatca
cctccagctactccgccgccaaaaactcgtcattccccaacaccccagcagtcaaaccgt
acaaggaaaagtcgtgtttctgtctctccagggagaacttcaggtaaagtgacaaaacat
aaaggtactgagaaaagagaatccccttcaccagcaccgaagcctcggaaagtagagttg
tctgaatcggaagaagataaaggtggcaaaatggctgcagcagattctgtgcagcagaga
cgccagtatagacgacagaaccagcagtcttcatctgattctggctcctcctcttcctca
gaagatgaacgacccaaaaggtcccatgtgaagaatggtgaggtaggcaggcgacggaga
cattccccttcccggagtgcctctccatcacctcgaaagcgccagaaagaggcttcccct
cgtggtagacggaggagaagtccctccccacctcccgccagaaggcgacgttctccttct
cctgctcctccacctcgtcgacgcaggtctcccacaccaccaccacgacgaaggactccg
tctcctcctccacgccgtcgctcaccttccccaagaagatactctcctccgatacagagg
agatactctccttctccacctccaaagagaagaacggcttcgccccctccccctcctaaa
cgaagggcatcaccatctccaccaccaaagcgtcgggtctcccattcaccacctcccaaa
caaagaagctccccagtcaccaagagacgttcgccttcattgtcatcaaagcataggaaa
gggtcttccccgagccgatctgcccgggaggcccggtcaccacagccaaacaaacggcat
tcgccctcaccacggcctcgcgctcctcagacctcaagtcctccacctgctcgaagagga
gcatcattgtcaccccaaagaaggcagtccccatctccaagttctaggcccattaggaga
gtctccaggactccggaacccaaaaagataaaaaaagctgcctcaccaagccctcagtcg
gtaaggagggtctcatcttcccgatctgtctcgggatctcctgagccagcagctaaaaag
cccccagcacctccgtcacctgtccagtctcagtcaccctccaccaactggtcaccagcg
gtaccggttaaaaaggctaaaagcccaacaccaagcccatcaccggcaaggaattcagac
ccagaaggaggtggaaagaaaaagaagaaaaagaaggacaagaaacacaaaaaggataag
aagcacaagaagcacaaaaaacacaagaaggagaaggctgtagctgccgctgctgcagcc
gctgtgacccctgcagctgtagctgctcccacaaccacatcagcacaggaagaaccggag
gcagagccagagcctaagaaggagactgaaagtgagcctgaagataaccttgatgactta
gaaaagcacctgcgtgaaaaggccctgagatcaatgcggaaggctcaagtgtccccacag
tcctag

All links

Pathway (3)   
   KEGG PATHWAY (2)   
   KEGG MODULE (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   UniGene (1)   
   BGD-BTA (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (1)   
   Pfam (1)   
All databases (18)   

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