KEGG   Bacillus thuringiensis BMB171: BMB171_C0048
Entry
BMB171_C0048      CDS       T01239                                 
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
btb  Bacillus thuringiensis BMB171
Pathway
btb03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:btb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    BMB171_C0048 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:btb03400]
    BMB171_C0048 (mfd)
Enzymes [BR:btb01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     BMB171_C0048 (mfd)
DNA repair and recombination proteins [BR:btb03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      BMB171_C0048 (mfd)
SSDB
Motif
Pfam: UvrB_inter TRCF DEAD CarD_TRCF_RID Helicase_C ResIII MFD_D3 UB2H RecG_dom3_C CdvA
Other DBs
NCBI-ProteinID: ADH04866
Position
54738..58268
AA seq 1176 aa
MIGLLEQFYKNEEIQSVINGLEDGLKEQLISGMATSSRSLLMAALYKKTKKSQLIVTHNL
YQAQKVHEDLVALLGEKDVWLYPVNELIASEIGVASPELKAQRIEVLNRLAAGENGIIVA
PVAGLRRFLPIKELWKQKQVEINLGQEIDLDALLHTLHHIGYERKSMVEAPGEFSLRGGI
LDIYPLTEELPFRIEFFDTEVDSIRLFDVDEQRSQGKKESVRFGPATEFLFSQEELKSGI
QHLEEGLTKTMQKLSDDKLKTTVLETVSHEIEMLKNGQSIEQMFKYLSIFYKEPASLIDY
LPEDGVVILDEISRIQETASHLETEEAEWYISLLGEGTIIQDLSFSHPFEGFLHHKKRSF
VYLTLFLRHIAHTHPQNIVNVTCKTMQDFHGQMNLLKTEIDRWNEGHFTTVVLGTDDERV
KKLQHILSDYDIEADIVEGTDILLPGRLQIAVGDLHAGFEMPMQKLVVITEKELFHKKVK
KSQRKQKLSNAERIKSYSELKVGDYVVHVNHGIGKFLGIETLEINGVHKDYLNIKYQGND
KLYVPIEQIDQVQKYVGSEGKDPKVYKLGGNDWKKVKTKVEKSVQDIADDLIKLYAEREA
SKGYAYTPDTAEQQEFESSFPYQETEDQLRSIDEIKKDMERGRPMDRLLCGDVGYGKTEV
AIRAAFKAIMDEKQVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRTRKQQNETIK
GLKDGTVDIVIGTHRILSKDVTYKDLGLLIIDEEQRFGVTHKEKIKQLKANVDVLTLTAT
PIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPALMREAIERELARGGQVYFLYN
RVEDIERKADEISMLVPDARVTYAHGKMNESELESVMLSFLEGQHDVLVSTTIIETGVDI
PNVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFAYKRDKVLSEVAEKRLQAIKEFT
ELGSGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKDAIEQRRGTDGAENIVN
VEIDLEVDAYLPDAYISDSKQKIMMYKQFRGVSAIEDIEELQEEMIDRFGDYPQEVGYLL
QIANIKVLAMKEQIELIKQNKFEVTFLFSEQASQNIDGGKLFMLGNSFGRMIGLGMEGSQ
LKIVMKTNGLETSKWLTIAENLLKGLPDVKKEVINA
NT seq 3531 nt   +upstreamnt  +downstreamnt
atgataggtttattagagcaattttataaaaatgaagagatacaatcggttattaatgga
ttagaagatgggttaaaagaacaacttatatcagggatggcaacgtcttctcgttcgtta
ttaatggcggctttatataaaaaaacaaaaaaatcacaattaatcgtgacacataactta
taccaagcacaaaaagtacatgaagatttagtggcattacttggtgaaaaagatgtgtgg
ctatatccagtgaatgaactgatagcatcggaaattggggttgcaagtccagaattgaag
gcgcaacgtatagaagtgttaaatcgcttggctgcgggagagaatggaatcattgtagcg
ccagtggcaggattgcgtagatttttaccaataaaagaattgtggaagcaaaagcaagtt
gaaatcaatctagggcaagagattgatttagatgcgctcttgcatactttacatcatatt
ggctatgaacgtaagtcgatggtagaagctccaggggagttcagtttgcgtgggggaata
ttagatatttatcctttaactgaagaactaccatttcgtattgaattctttgatacagaa
gtcgattctattcgattatttgatgtggatgaacagcgttctcaaggtaaaaaagaaagc
gttaggtttggtccggcaacagagtttttattttcacaggaagaattaaaatcaggaatt
cagcatcttgaagaaggtttaactaagacgatgcaaaaactttctgatgataaactaaag
actacagtgcttgagacggtaagtcatgaaattgagatgttgaaaaacgggcaaagtata
gaacagatgtttaaatacttatctattttctataaagaacctgctagtctgatagattat
ttaccagaagacggtgttgtaattttagacgagatttcccgtattcaagaaacagcatcg
catcttgaaacagaagaggcggaatggtatatatcgcttcttggtgaaggaacaattatt
caagatttatctttctctcacccattcgaggggtttcttcatcataaaaaaagaagtttt
gtatatttaacgttattcttgcgtcatatcgcacacacacatccgcaaaatattgttaat
gtaacatgtaaaacaatgcaagatttccatggacagatgaatttgttaaaaacagaaatt
gatagatggaatgaagggcattttacgactgttgtacttggaacagatgatgaacgtgtg
aaaaaattacaacatattttaagtgattatgatattgaggcagatattgtagaaggtaca
gatatcttattgcctggaaggttacaaattgctgtaggtgatttacatgcaggatttgaa
atgccgatgcaaaagcttgttgtcattactgaaaaggagctttttcataagaaagttaaa
aaatcacaacgtaaacaaaagttatcgaatgctgaacgtattaaaagttattcggaatta
aaagttggagattatgtagttcacgtaaatcatggtataggtaaatttttaggtattgag
acattagagattaatggtgttcacaaagattatttaaatattaaatatcaaggtaatgat
aagctatacgttccaattgaacaaattgatcaagtccaaaaatatgtaggatctgaaggt
aaggatccgaaagtttataaattaggcggtaatgattggaaaaaggttaaaacgaaagtt
gaaaaatctgtacaagacattgcggatgacctaattaaactatatgctgagcgcgaagct
tcaaaaggctatgcatatacgccagatacggcagaacaacaagagttcgaatcctctttc
ccatatcaagagacagaggatcagttacgttctattgacgagattaaaaaagatatggaa
cgcggacgcccgatggataggctcctttgtggtgacgtagggtatggaaagactgaagtg
gctattcgtgcggcatttaaagcaattatggatgaaaaacaagttgcaattttagtaccg
acaacgattcttgcgcagcaacactatgaaacaattcgagagcgttttcaagattatccg
atcaatataggcttattaagtagattccgtacgagaaaacaacaaaatgaaacaattaag
ggcttaaaggatggaacagtagatatcgtaatcggaacacatcgtattttatctaaagat
gttacgtataaagatttagggcttcttattattgatgaagaacaaagatttggtgtaaca
cataaagaaaaaattaaacaattgaaggcaaatgttgacgtattaacattaacggcaact
ccgattccgcggacgcttcatatgtctatgcttggtgtgcgcgacttatctgttattgag
acaccaccagaaaatcgtttcccagtccaaacgtatgtagtcgagtataatccagcgtta
atgcgagaggcaatagagcgagagcttgcaagaggtggtcaagtttacttcctatataac
cgtgtagaggatattgaaagaaaagcagatgaaatttcgatgttagttccagatgcccgc
gtaacgtacgcacatgggaaaatgaacgaaagcgaattagagtctgttatgctatcattt
ttagaaggacagcatgatgttcttgtaagtacaacaattattgagacgggtgtagatatt
ccgaatgtaaatacgttaattgtatttgatgcagatcgtatgggattatcacagttgtat
cagcttcgtgggcgtgttggacgttctaatcgtgttgcgtatgcatactttgcgtataaa
cgtgacaaagtgctgtcagaggttgcagagaagcgtctacaagcaattaaagagttcacg
gaacttggatctggtttcaaaattgcgatgagagatttatctattcgtggagcaggtaat
ttgttaggggcagaacagcatggatttattgattctgtcggatttgatctatattcgcaa
atgttaaaagatgcaattgaacagcgtagaggaacagatggggctgaaaatatagttaat
gttgaaattgacttagaggtagatgcatatttaccagatgcttatatttcagatagtaag
caaaaaattatgatgtataaacaatttagaggtgtttctgcaattgaggatattgaagaa
ttgcaggaagaaatgatcgatagatttggcgattatccacaagaagttggttatttatta
caaattgcaaatattaaagtgttggcaatgaaagaacaaattgaattaattaagcagaat
aaatttgaagtaacattcctattttctgaacaagcaagtcaaaatattgatggtggaaaa
ttattcatgctcggaaatagttttggacgtatgatcggtttaggaatggaaggatcacaa
ttgaaaattgttatgaaaacaaatggcttagagacatcgaagtggttaacaattgctgaa
aatttattaaaaggcttaccagatgtaaaaaaagaagtaataaatgcctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (10)   
   Pfam (10)   
All databases (19)   

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