KEGG   Bombus terrestris (buff-tailed bumblebee): 100644887
Entry
100644887         CDS       T04364                                 
Name
(RefSeq) 5'-3' exoribonuclease 2 homolog
  KO
K12619  5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
bter  Bombus terrestris (buff-tailed bumblebee)
Pathway
bter03008  Ribosome biogenesis in eukaryotes
bter03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bter00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    100644887
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100644887
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bter03021]
    100644887
   03019 Messenger RNA biogenesis [BR:bter03019]
    100644887
   03009 Ribosome biogenesis [BR:bter03009]
    100644887
   03016 Transfer RNA biogenesis [BR:bter03016]
    100644887
Transcription machinery [BR:bter03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     100644887
Messenger RNA biogenesis [BR:bter03019]
 Eukaryotic type
  mRNA degradation factors
   5'-3' decay
    5' exonucleases
     100644887
Ribosome biogenesis [BR:bter03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    100644887
Transfer RNA biogenesis [BR:bter03016]
 Eukaryotic type
  tRNA degradation factors
   Rapid tRNA decay (RTD) pathway factors
    100644887
SSDB
Motif
Pfam: XRN_M XRN_N zf-CCHC_4
Other DBs
NCBI-GeneID: 100644887
NCBI-ProteinID: XP_003395847
UniProt: A0A9B0BW81
Position
LG B05:complement(765166..794479)
AA seq 946 aa
MGVPAFFRWLSRKYPSIIVECIEQKPITTNGVRVPVNSVDPNPNGIEFDNLYLDMNGIIH
PCTHPEDKPAPKNEEEMMEAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFR
ASKETIEKVNEIKRIRSELILKGVSLPPEKPKEDHFDSNCITPGTPFMARLSKCLHYYIH
DRLNNDPGWRNIKVILSDANVPGEGEHKIMDFIRKQRAQPDHDPNTQHVLCGADADLIML
GLATHEPNFTIIREEFKPNKPKPCDICGQLGHEMQDCTGAEANQGDETDTFGSECQYIFV
RLNVLREYLERELQMPNLPFKYDFERVIDDWVFMCFFVGNDFLPHLPSLEIREGAIDRLV
NLYKKAVYKTGGFLTDSGDVNLDRVQLIMSELGEVEDEIFKRRQQNELAYKQREKDKKKL
LLGISNKKPKWIPMGQFAPTRIGEHVSPVQNARYEAYEMRVRGQNYHTSARSSQKMLESM
MRPENSTNQITKRRREPVEDDSDDDQVHDEVRLWEDGFKDRYYESKFDVSPDNLAFRNNV
ALQYVRGLCWVLRYYYQGCASWKWYFPYHYAPFASDFINIGGLSTEFEKGTTPFRPLEQL
MGVFPAASSKHIPAPWAKLMIDPRSPIIDFYPEDFKIDLNGKKFAWQGIALLPFVDEKRL
FKALEPYYDCLTEAEKKRNVEGDNRLYVGLGNSGYNFIKGLYTNHVLFDAETQICIDNMR
GIVLLADDCVGDGATLPSPINGLPVRNNKVYCARFRDPKYSSSFIFPARKLKGVREPPRV
LKPQDFDQMNRNTGNTWKPQIGFTPSTQVATLNDAGRRILRHYTNHNGVPPPYNPVSIPQ
SLYPAHHGYRSTDYQGRYESAGSSQFAMMPGPWARGYGTPHNYQQYSEYQQRNNYNAQQY
GRNNYHNPQYNSYGSQYNQQRNYSPNYQGNNGGNGANRGGGWGRSM
NT seq 2841 nt   +upstreamnt  +downstreamnt
atgggtgtaccagcattttttcgatggttgagtcggaagtatccttctataatagtagaa
tgtatcgagcagaagccgataactacgaatggtgtacgggtacctgtgaattcggtagat
cctaatccaaacggaatagaatttgacaacttgtatcttgacatgaatggtatcatacat
ccttgtactcatccagaagataagccagcgccaaaaaatgaggaagaaatgatggaagct
atttttgaatgcattgatcgcttatttcgtattgtgagaccaagaaagttactttacatg
gcaattgatggagttgcacccagagcaaaaatgaaccaacagagatcaagacgatttaga
gcttcaaaagaaacaattgaaaaagttaacgaaataaagagaatacgttctgaattaatt
ctcaaaggggtatccttgcccccagaaaaaccgaaagaagatcatttcgatagcaattgt
attacgccgggcacgccatttatggcaagattatcaaagtgtttgcattactatatacac
gatcgtttaaacaatgatcctggttggagaaatataaaagtaattttaagcgatgcgaat
gtaccaggtgaaggagaacataaaataatggattttatacgcaaacaaagagcacaaccg
gatcatgatcccaacacacaacacgttttatgtggtgccgatgctgatttaattatgtta
ggacttgcaacacacgaacctaattttactattattcgtgaagaatttaagccaaataag
ccgaaaccatgcgatatatgtggtcaattaggacatgaaatgcaggactgtacaggcgca
gaggctaatcaaggagacgaaacagatacttttggatctgaatgccagtatatatttgtg
cggttaaatgtcctcagagaatacttagaaagagagttgcaaatgcctaatctaccattt
aaatacgatttcgagcgagttatcgatgattgggtgttcatgtgtttcttcgtaggaaac
gattttcttccgcatcttccatctttggagattagagaaggggcaattgatagactcgtt
aatttgtataaaaaagctgtatataaaacaggaggatttttgacagatagtggagatgta
aatttagacagagttcaacttataatgtctgagctgggcgaagtggaagacgaaattttc
aagagaagacaacagaatgaattagcctacaagcaacgtgaaaaagataaaaagaaacta
ttgctgggaatcagtaacaaaaaaccaaagtggattcctatgggacaatttgcaccaact
cgtattggcgaacatgtgagcccagtacaaaatgcacgttatgaagcttatgagatgcgc
gttcgtggtcaaaattatcatacaagtgcaagaagttctcagaagatgttagaaagtatg
atgcgtcctgagaattcaactaatcaaataacgaaacgtagaagagagccagtcgaagat
gattcggacgacgatcaagtacacgatgaagttagattgtgggaggatggctttaaagat
cgttattacgaatcgaaattcgacgtgtctcctgataatttagcattcaggaataacgta
gcgttacagtatgtgcgcggtttatgttgggttttacgatattactatcagggttgtgct
tcgtggaaatggtattttccgtatcattacgcaccattcgctagcgatttcattaatatc
ggtggtctttccaccgaatttgagaaaggaactacaccattccgtccattagagcaattg
atgggtgtatttccagcagctagcagtaaacatatccctgcgccgtgggcaaaattaatg
atcgatccaaggtcgccgattatcgacttctatccggaagattttaagatcgatttaaac
ggtaaaaaatttgcctggcaaggaatagctctacttccttttgtggatgagaaacgattg
ttcaaggcattggagccttattacgattgcttaacagaagcggaaaagaaacgaaacgtt
gaaggagacaaccggctatacgtaggacttggcaatagtggttataattttataaaggga
ctttatacgaatcacgtactattcgacgcggaaactcaaatatgcatagacaacatgcga
ggtatagttttattggcagacgattgcgtcggagacggggctactttaccttcacccata
aacggtctaccagtcaggaataataaagtatattgtgccagattcagagatccaaaatat
agtagtagtttcattttccctgcgaggaagttgaagggtgtcagagaaccaccaagagtt
ttgaaacctcaagactttgatcaaatgaatcgtaatactggaaacacttggaaaccgcaa
attggtttcactccttccacacaagtagctacattgaacgacgcaggtcgaagaatactt
agacattacacgaaccacaatggagtgccaccaccatacaatcccgtatcgataccacag
tcgctatatccagcacatcacggttaccggagtacagactatcaaggaagatacgagagt
gcaggatccagccagtttgcgatgatgcctggtccatgggcgaggggttacggcacgccc
cataattatcaacagtattcggagtaccagcaaagaaataattacaacgcccaacagtac
gggcgaaacaattaccacaatccacagtacaacagttacgggtcgcagtacaatcagcaa
cggaattattctcctaactaccaagggaataacggaggaaatggggcaaacaggggagga
gggtggggacgatcgatgtag

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (3)   
   Pfam (3)   
All databases (22)   

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