KEGG   Bifidobacterium thermophilum: D805_0906
Entry
D805_0906         CDS       T02505                                 
Name
(GenBank) ATP-dependent DNA helicase PcrA
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
btp  Bifidobacterium thermophilum
Pathway
btp03420  Nucleotide excision repair
btp03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:btp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    D805_0906
   03430 Mismatch repair
    D805_0906
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:btp03400]
    D805_0906
Enzymes [BR:btp01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     D805_0906
DNA repair and recombination proteins [BR:btp03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     D805_0906
   MMR (mismatch excision repair)
    Other MMR factors
     D805_0906
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 AAA_11 Viral_helicase1 AAA_30 DEAD UvrD_C_2
Other DBs
NCBI-ProteinID: AGH41173
UniProt: M4RF39
Position
1123978..1125696
AA seq 572 aa
MPSNSYGVTDEQQEIFDYEPFGMVITAPAGCGKTEALAYRAKGLLERYDFSGNGRRLLIT
SFTNQAKDNINERLKKYIGVQTLRDHVTVCNFHGLASRIIKAHGQLIGIGGDWTLANVDW
VGRELRTGGYTRDDSKQAGQALRDAKLTCLTDDDVMKQLESIGGQAGEIARTIEKKRINE
KMISYDDQIRVALWLLSDHRVAGLYRNHFFAALVDEFQDLTPQQLKFVQTLCGKNITFAG
DTAQSIYSFAGADVAYVQQEITKDSGRQIKLLRSFRSAPRILNAVNSLSPLTGSEHLSAA
FPNRWGSGGVVGLSSFDDEGSEAAWVAGMSKSILRHCPHQRIGIITRLDNRAITLKRTLT
QNNIEYTDWKSGIFRPEVAGVLSDICSDIQARTFENNLEALQYIQQKAATYHVGQIEELE
EGCGWLFDQLFQRGFDSSKACEIKEKITVRRGNETIATRDGIHCLTGHAGKGQQFDWVFV
LGMEDGTIPDFRAKSFEEKCEEARVLSVMISRARIGVFGTYTKGKVDRWGNHHVNTPSEF
FEYLKKVPGLLCGKDDIVTWCRKADWPAIALM
NT seq 1719 nt   +upstreamnt  +downstreamnt
atgccatctaattcttatggagttaccgatgagcagcaggagattttcgattacgagcct
tttggcatggtgattactgcgccagctgggtgcggtaaaaccgaagcgcttgcctacagg
gcaaaaggtctccttgagcgatacgatttttcagggaacggtagaagactgctcatcacc
tctttcactaaccaggcgaaggacaatattaatgagcggcttaagaagtacatcggcgtg
cagactctaagagatcatgtcaccgtctgcaattttcatggcctagcctcacgaatcatt
aaagctcatggtcagctcataggcatcggcggtgattggactcttgcaaatgttgactgg
gtaggtagagagcttcgcactggcggatacactcgagatgatagtaaacaggctggtcag
gctttgcgtgacgcaaaacttacatgcctgaccgatgatgacgtaatgaaacagcttgag
agcatcggtggacaagctggcgaaatcgctcgtacgattgagaaaaagcgcatcaacgag
aagatgatttcctacgacgatcaaattagagttgcgctgtggcttctaagcgatcatagg
gtggccggcctttacagaaaccatttcttcgcggcactggttgacgagttccaagattta
acgccccaacagctgaaatttgtgcaaacactttgcggaaagaacatcacgtttgccgga
gataccgcgcaaagcatctattcgttcgcaggagcagatgtagcttatgtacaacaagag
attaccaaagattccggtaggcaaataaagctgctgaggtcatttagatcggcacctaga
attctaaacgcagttaactccctttccccgttgactggcagcgagcatcttagtgctgcc
tttcctaatcgctggggctcgggtggagtcgtgggactttcgtcctttgatgacgagggc
agtgaagccgcttgggtggcgggcatgtcaaagtcgattttgcgccattgtccacatcag
cgaatcggaatcattacaaggctggataaccgcgctatcaccttaaagaggactttaacg
caaaacaatatcgaatataccgattggaagagtggcatcttcagacccgaggtagcagga
gtccttagcgacatttgctctgacatacaagcccggacctttgaaaataaccttgaggct
cttcaatacattcagcagaaggccgctacctaccacgtgggccaaatagaggagcttgaa
gagggctgcggttggctctttgaccagctttttcaacgcggttttgattcttcaaaagcc
tgtgaaattaaagaaaagattaccgtgaggagaggaaacgagaccatcgcaacacgtgat
ggtattcactgtctcacggggcatgctggaaaaggccagcaattcgactgggtgtttgtg
cttggtatggaggatggaaccatacctgactttagagcgaaaagcttcgaagagaaatgc
gaagaagcaagagtgctttctgtaatgatttcccgtgcacggattggcgtctttggcaca
tatacaaaagggaaagttgatagatggggaaaccatcacgtgaacacgccctcggagttt
ttcgagtatctgaaaaaagtgcctggacttttgtgcggcaaagatgacattgtgacgtgg
tgtcgtaaagctgactggccagcaatagcattgatgtaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (19)   

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