KEGG T02901: Btoyo

Bacillus toyonensis: Btoyo_0102

Entry

Btoyo_0102        CDS       T02901

Name

(GenBank) ATP-dependent DNA helicase RecQ

K03654

ATP-dependent DNA helicase RecQ [EC:5.6.2.4]

Organism

bty Bacillus toyonensis

Pathway

bty03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:bty00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Btoyo_0102
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bty03019]
    Btoyo_0102
   03400 DNA repair and recombination proteins [BR:bty03400]
    Btoyo_0102
Enzymes [BR:bty01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Btoyo_0102
Messenger RNA biogenesis [BR:bty03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Btoyo_0102
DNA repair and recombination proteins [BR:bty03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      Btoyo_0102

SSDB

Motif

Pfam:

RQC DEAD HTH_40 Helicase_C HRDC RecQ_Zn_bind ResIII HTH_7 HTH_10 GerE

Other DBs

NCBI-ProteinID:

AHA06110

Position

complement(97099..99216)

AA seq 705 aa
MFTKAQELLASYFGYSSFRRGQDETIKNVLEGKDTVCIMPTGGGKSICYQIPALVFEGTT
LVISPLISLMKDQVDTLIQNGISATYINSSISMTEANHRIQLAKQGHYKLLYVAPERLDS
MEFVDQLIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEKPLVLALTATATPQ
VRDDICKTLEINQENTIMTTFERENLSFSVIKGQDRNAYLADYIRQNQKESGIIYAATRK
VVDQLYEDLMKAEVSVSKYHAGMSDHDRNEQQELFLRDEVSVMIATSAFGMGIDKSNIRY
VIHYQLPKNMESYYQEAGRAGRDGLDSECILLYSSQDVQVQRFLIDQSTGESRFSNELEK
LQNMTDYCHTEQCLQSFILQYFGEEPKEDCGRCGNCTDDRESIDVTRESQMVLSCMIRTN
QRFGKQMIAQVLTGSKNKKVIEFNFHTLPTYGLLSNRSVKEVSDFIEFLISDELIAVEHG
TYPTLKVTGKGKEVLLGNENVLRKERVETRQIVQDHPLFEVLREVRKEIAQGEGVPPFVI
FSDQTLKDMCAKMPRNDSELLTVKGIGEHKLVKYGSHFLQAVQHFIDENPNYVETIKTEV
VSERKKSGKASANSHLETYEMYKQGIDLNEIAKERDLSRQTIENHLIRSFEDGMEVDWQS
FVPKEYESLIETAVQNAEGGLKSIKEQLPNEVSYFMIRAYLQIRK

NT seq 2118 nt +upstreamnt +downstreamnt
ttgtttacaaaagcacaagaacttttagcgtcttatttcggttattcgtcattccgaaga
gggcaagatgaaacaattaaaaatgtattagaggggaaagatacagtttgcattatgcct
acgggcggaggtaagtcaatttgttatcaaattcccgcattagtattcgaaggaacgacg
ttagtaatatcacctttgatttcacttatgaaagaccaagtagatacactaatacaaaac
ggtatatccgctacgtatattaatagttctatttcaatgacagaagctaatcatagaatt
caattagcgaaacaagggcattataagttactttatgtcgctcctgagcgtcttgattca
atggagtttgttgatcaacttatcgatatgaaaatcccgatgattgcgattgatgaggcg
cactgtatttcgcagtggggacatgatttccgtccaagttatttacatatacatcgtata
ctagattatctcccagaaaaaccgctcgtattagcgttaacagcgacagcaactccgcaa
gtacgtgatgatatttgcaaaacgcttgaaattaatcaagaaaatacaattatgacaact
tttgagcgtgagaacttatcattttctgtcattaaaggacaggatcgtaatgcttattta
gcggattatattcgtcaaaatcaaaaggaatcagggattatatatgcagctactagaaaa
gtagttgatcagttgtatgaagatttaatgaaagcggaagtttcggtatcaaaatatcac
gctggtatgagtgatcatgatcgaaatgagcaacaagaactctttttacgagatgaagta
agtgtaatgatagcgacatctgcattcggaatgggtattgataaatcgaatattcgttac
gttattcattatcagctgccaaaaaatatggaaagttactatcaagaagcaggacgtgct
ggtcgtgacggattagatagtgaatgtattttgttatattcttctcaagatgtgcaagta
caacgctttttaattgatcaatcaacaggagaatcacgtttttcgaatgaacttgaaaaa
ttgcaaaatatgactgattactgtcatacagaacaatgtttacaatcattcattttgcaa
tactttggagaagaaccgaaagaagattgtggacgctgcggtaattgtacggatgaccgt
gagagcatcgatgtgacgagagaatcacaaatggttttatcctgtatgattagaacgaac
caacgatttggaaaacaaatgattgcacaagtattaactggatcgaaaaataagaaagtt
attgaatttaattttcatactttaccaacgtatggccttttatcaaaccgtagtgtaaaa
gaagtgagtgactttatagagtttttaatttcagatgagttaattgcagttgaacatggt
acgtatccgacattaaaagtaacgggaaaagggaaagaagtattacttggtaatgagaat
gttctacgaaaagaacgagtagagacgagacaaatcgtccaagatcatcctttatttgaa
gtgttgcgtgaagtacgtaaagaaatcgcacaaggagaaggtgtacctccgttcgttatt
ttctctgaccaaacattaaaagatatgtgtgccaaaatgccgcgaaatgattccgaactg
ttaacagtaaaaggtattggagaacacaaacttgtgaagtatggctcgcacttcttacaa
gcagttcagcattttattgatgaaaatccaaactatgtagaaacaattaagacagaagtt
gtttctgagcgtaaaaaatcaggaaaagcttcagcgaattctcatttggaaacgtatgaa
atgtataaacaaggaattgacctaaatgagattgcaaaagaacgtgatctatcaagacaa
acaattgaaaaccatttaattcgctcttttgaggatgggatggaagtagattggcaaagt
tttgtaccaaaagagtatgaatctcttatagaaactgctgtacaaaatgcagaaggtggt
ttgaaatctattaaagaacagcttccaaatgaagtgagttactttatgatccgtgcttat
ttacaaataagaaagtag

All links

Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (10)   
   Pfam (10)   
All databases (20)   

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