KEGG Buchnera: BU033

Buchnera aphidicola APS: BU033

Entry

BU033 CDS Buchnera

Gene name rpoC

Definition DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)

Orthology K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]

Pathway buc00230 Purine metabolism
buc00240 Pyrimidine metabolism
buc01100 Metabolic pathways
buc03020 RNA polymerase

Class Metabolism; Nucleotide Metabolism; Purine metabolism [PATH:buc00230]
Metabolism; Nucleotide Metabolism; Pyrimidine metabolism
[PATH:buc00240]
Genetic Information Processing; Transcription; RNA polymerase
[PATH:buc03020]
Genetic Information Processing; Replication and Repair; DNA repair
and recombination proteins

SSDB

Motif Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3
RNA_pol_Rpb1_4 ApbA_C
PROSITE: PHOSPHOPANTETHEINE

Other DBs NCBI-GI: 15616662
NCBI-GeneID: 1109541
RIKEN: BU033
UniProt: P57145

Position complement(36321..40544)

AA seq 1407 aa
MKDLLKFLKSQTKNEDFDAIKISLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQSKVRRERMGHIELSSPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIETGMTNLEKRQILTEEQYLDSLEEFGDEFHATM
GAEAIQFLLKDINLVQECNVLRIELNETNSETKRKKLTKRIKLLESFIQSHNKPEWMILN
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LHLHQCGLPKKMALELFKPFIYGKLEVRGLATTIKAAKKMVEREEAIVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLESQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREKINGKGEGMLLNGSNEAEKVYRLG
IAELHSLVKVRIIEYKKNEDKSFTAIKKIIPTTIGRAILWMIIPKGLPFSIVNQTLGKKD
ISKMLNTCYRILGLKSTVFFADQIMYTGFAYAARSGASVGIDDMVIPEKKANIINEAEIE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMQNLSTESVINKKGYKQKQISFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTQDDCRTHEGILMTPLIEGGDVKEPLRERVL
GRVTAENIIIPNTKNILIKRNTLLNEKWCDLLEHNSIDNVKVRSVVNCDTDFGVCAYCYG
RDLARGNLVNKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNQGIINL
NNAKFVINSAGKTVITSRNVELNIIDNFGRTKESYKVPYGAIMAKGDGEKVHSGETVAKW
DPHTMPVITEVNGLVRFVDMIDGQSITRQADELTGLSSIVILDTAERMSSGKDLRPALKI
IDCNGNDVLISGTDMPAQYFLPGKAIVQLDDGVQISSGDTLARVPQESGGTKDITGGLPR
VADLFEARRPKELAILAEISGIISFGKETKGKRRLVITPVDGSDSYEEMIPKWRQLNVFE
GERVDRGDVISDGPESPHDILRLRGVQAVTRYIVNEVQEVYRLQGVKINDKHIEVIIRQM
LRKATVVKSRDSDFLEGEQVEFSHIKISNRMLDKKKKMPATFSRDLLGITKASLATESFI
SAASFQETTRVLTESAVAGKRDELRGLKENVIVGRLIPAGTGYAYHKERLNRRQKKHNNP
TVSSSQISAEEASASLSELLNSALIEK

NT seq 4224 nt +upstreamnt +downstreamnt
gtgaaagatttactaaaatttctaaaatcccaaactaaaaatgaagattttgatgctatt
aaaatctcgttagcttcacctgatatgatcagatcatggtcatttggggaagtcaaaaaa
cctgaaactattaattatcgtacatttaaacctgaacgagatggattattttgtgctcgc
atttttggtccagtaaaagattacgaatgtttgtgtggtaaatataaaagattaaaacat
agaggagtaatttgtgaaaaatgtggtgttgaagtaacacaaagcaaagttagacgtgaa
cgaatgggtcatatagaactttcttcacctacagctcatatttggttcttaaaatctttg
ccatcaagaataggtttattattagatatgcctttaagagatattgaaagagtactatat
tttgaatcttatgttgtcatagaaacaggcatgactaatcttgaaaaacgtcaaatttta
accgaagaacaatatctagattcattggaagaatttggagatgaatttcatgctacaatg
ggagcggaagcgattcaatttttattgaaagatattaatttagtacaagaatgtaatgta
ttgagaatagaactaaatgaaacaaattctgaaacaaaaagaaaaaaattaacaaaaaga
attaaactattagaatcttttattcaatcgcataataaacctgaatggatgattcttaac
gtattaccagtattaccacctgatctaagaccattagtaccattagatggaggtagattt
gcaacatcagatttaaatgatttgtatcgtcgagtgatcaatagaaataatcgtcttaaa
cgtttattagatttagcagctccagatataattgtacgcaatgaaaaaagaatgttacaa
gaagcagtagatgctttattagataatggtcgaagaggtagagcaattacaggatcaaac
aaaagacctcttaaatcattagctgatatgattaaaggaaaacagggaagatttcgacaa
aatcttcttgggaaacgtgtagattattctggtcgttcagtaattactgtaggtccttat
cttcatttgcatcaatgtggtctacctaaaaaaatggcattagaactttttaaaccgttc
atatatggcaaattagaagtgcgtggtttagccactactattaaagcagcaaaaaaaatg
gtggaaagagaagaagcaatagtgtgggatattttagacgaagtaatccgcgaacaccca
gttcttttaaatcgtgcacctactttacatcgattaggtattcaagcatttgagccagtc
cttatagaaggaaaagctattcaacttcatccattagtatgtgcagcttacaatgctgat
tttgatggagaccaaatggctgtccatgtcccattaactctagaatcacagttagaagct
agagctttaatgatgtcaactaataacattttatcacctgcaaatggtgaaccaattatt
gtaccttctcaagatgttgttttagggttgtattatatgactcgcgaaaaaatcaatgga
aaaggtgaaggtatgttattaaatggttctaatgaagcagaaaaagtataccgtttaggt
attgctgaactacattcactagtaaaagttcgaataatagaatataaaaaaaatgaagat
aaaagttttactgcaataaaaaaaataattcctactactataggtcgagcaattttgtgg
atgattatcccaaaaggactaccttttagtattgttaatcaaactttaggtaaaaaagat
atttctaaaatgcttaatacttgttatcgtattttaggactgaaatctactgtttttttt
gctgatcaaattatgtacaccggattcgcttatgcagcaagatctggagcttcggtaggt
attgatgatatggtaataccagaaaaaaaggcaaatatcatcaatgaggctgaaattgaa
gttgctgaaatacaagaacaattccaatctggattagtgactgcgggtgaaagatataat
aaagttattgatatttgggcggcagctaatgaacgagtagcaaaagcgatgatgcaaaac
ttatctacagaatctgttatcaacaaaaaaggttacaaacaaaagcaaatatcttttaat
agtatatttatgatggctgattcaggggcacgtggttctgccgcacaaattcgtcaatta
gctggtatgagaggattgatggccaaacctgatggttctattattgaaacaccaattaca
gctaattttagagaaggtttgaatgtattacaatattttatttctacacatggagctcgt
aaaggattagctgatacagcactaaaaactgcaaactctggatacttaacacgtcgttta
gtagatgtagctcaagatttagttgtaacacaagatgattgtcgaacacatgaaggaatt
ttaatgactccattaattgaaggaggagatgtaaaagaaccactacgtgaacgtgtttta
ggtcgtgttactgcagaaaatattattattccaaatactaaaaatatattaatcaaaaga
aatacacttctaaatgaaaaatggtgtgatcttttagagcataattctatagataatgtc
aaagtacgatcagtagtaaattgtgatactgattttggtgtatgcgcttactgctatggt
cgagatttagcacgaggtaatttagtcaataaaggagaagcaattggggtaattgctgca
caatctataggagagccaggcacacagctaactatgagaaccttccatattggtggtgca
gcatccagagctgcagcagaatctagtattcaagtaaaaaatcaaggtattataaatctt
aataatgcaaaatttgtaattaattctgctggtaaaacagtaattacttcaagaaatgta
gaactaaatattatcgataattttggaagaacaaaagaaagctataaagttccttatgga
gctattatggctaaaggggacggtgaaaaagtacattcaggggaaactgttgcaaaatgg
gatccacataccatgccagttattactgaagttaatgggttagtacgttttgtagatatg
attgatggtcaaagtattacaagacaagcagatgaactaacaggtttgtcttctatagta
atattagatacagcagaaagaatgtctagtggtaaagatttaagaccagcattaaaaatt
atcgattgtaatggaaatgatgttcttatttcaggaacagatatgccggctcaatatttc
ttacctggaaaagcaatcgttcaacttgatgacggagtacaaatcagttcaggcgataca
ttagcgagagtcccacaagaatctggaggtactaaagacataacaggtggattaccaaga
gtagcagatttatttgaagctagacgcccaaaagaattagcaattttagcggaaattagt
ggcattatatcttttggaaaagaaactaaaggtaaaagaagattagtaattacaccagta
gatggtagtgattcttatgaagaaatgattccaaaatggagacaattaaatgtatttgaa
ggagaacgagtagatcgaggagatgtcatatctgatgggccggaatcaccacatgatatc
ttaagattaagaggtgttcaagctgtaactagatatatagtgaatgaagtacaagaagta
tatcgtttacaaggtgtaaaaattaacgacaaacatattgaagtaattatacgacaaatg
cttcgaaaagctactgtagttaaatcaagagattcagattttctggaaggtgaacaagtt
gaattttctcatataaaaatatcaaatcgcatgttagataaaaaaaagaaaatgccagct
actttttcaagagatttattaggaattactaaagcatcacttgcgacagaatcttttata
tctgcagcttctttccaagaaacaacaagagtattaacagaatctgcagttgcaggaaaa
agagatgaattaagaggattaaaagaaaatgtaattgttggacgtttaattcctgcagga
acaggatatgcatatcacaaagaacgtttgaatcgtcgtcaaaaaaaacataacaatcca
acagttagcagttctcaaattagtgctgaagaagcttctgctagtctttcagaattatta
aattctgctcttatagaaaaataa

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (2)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (7)   
   Pfam (6)   
   PROSITE (1)   
Others (1)   
   RIKEN-BUC (1)   
All databases (22)

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