KEGG Buchnera: BU034

Buchnera aphidicola APS: BU034

Entry

BU034 CDS Buchnera

Gene name rpoB

Definition DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)

Orthology K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]

Pathway buc00230 Purine metabolism
buc00240 Pyrimidine metabolism
buc01100 Metabolic pathways
buc03020 RNA polymerase

Class Metabolism; Nucleotide Metabolism; Purine metabolism [PATH:buc00230]
Metabolism; Nucleotide Metabolism; Pyrimidine metabolism
[PATH:buc00240]
Genetic Information Processing; Transcription; RNA polymerase
[PATH:buc03020]
Genetic Information Processing; Replication and Repair; DNA repair
and recombination proteins

SSDB

Motif Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_7 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2
RNA_pol_Rpb2_45 RNA_pol_Rpb2_1
PROSITE: RNA_POL_BETA

Other DBs NCBI-GI: 15616663
NCBI-GeneID: 1109542
RIKEN: BU034
UniProt: P57146

Position complement(40622..44650)

AA seq 1342 aa
MVYSYTEKKRIRKDFGKRPKVLDIPYLLSIQLNSFKKFIQPDLSGQHGLEAAFRSVFPIR
GYNGNSELQYVSYRLGETIFDVKECQIRGATYSAALRVKLRLVIYERDILEATVKDIKEQ
EVYMGEIPLMTNNGTFIINGTERVVVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPVSIILRALNYNTEEILNIFFEKNIFKIENNKIVLE
LVPERLRGETASFNIKKNGIIYVEKGRRITAKHIQELKNNKIKSITVPVEYILGRIVSKN
YVDKKTGETIISSNTELSLEILEKLKKLGFYSIETLFTNDLDHGPYISETLRIDSSNDRM
SALIEIYRVMRPGEPPTKEATENLFENLFFSEDRYDLSTVGRMKFNRSLLREETKGSSTL
NKEDIIDVIKKIIDIRNGKGEVDDIDHLGNRRVRSVGEMAENQFRIGLVRVERAVKERLS
IGDLDALMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGLGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNSHGFLETPYRKVCNGLVS
EEIHYLSAIEEGNYIIAQANTNIDKTGFFTDDLVTCRHKGESSLFNRNQVNYMDVSTQQI
VSVGASLIPFPEHDDANRALMGANMQRQAVPTLKTDKPLIGTGMERAVAVDSGVTAVAKR
SGVVQYVDASRIVIKVDEKEMYSREAGIDIYNLTKYTRSNQNTCINQQPCVNLGEKIKKG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELSCIS
RDTKLGAEEISSDIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQIFTRDGVKKDKRALEIEDMQLKKIKQDL
TEEFKIFESSLFTHIKKTFISLDIETKQLDTLPFEKWFSVDIKQKDKKKEIEKLAKQHHE
LKEEFNKKIEIKRQKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PVEDMPYDENGIPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINHMLKTQEKISN
LRKFIQKAFDLGDNLRQKVNLDTFSNEEILRLAKNLKNGIPISTPVFDGAQENEIKQMLK
FAGLPTSGQIILFDGRTGEKFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGASYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
ESFNVLLKEIRSLGINIELESE

NT seq 4029 nt +upstreamnt +downstreamnt
atggtttactcttataccgaaaaaaaacgtattcgtaaagattttggcaaacgtcctaaa
gtgttagatataccatatcttctttcgattcaattaaattcttttaaaaaatttattcaa
ccagatttatcaggtcaacacggattagaagcagcatttcgttctgtatttcctattcgc
ggttataatggaaactctgaattacaatatgttagttaccgtttaggagaaacaatattt
gatgttaaagaatgtcaaataagaggtgctacttattcggcggcactgagagtaaaatta
cgccttgttatctacgaacgtgacatattagaagctactgttaaagacattaaagaacaa
gaagtatatatgggtgaaattccattaatgactaacaatggaacatttataataaatgga
acagaaagagtagttgtttctcagttacaccgtagtcctggagtcttttttgatagtgat
aaaggtaaaacacactcctcaggaaaagttctatataatgcccggattattccttatcgc
ggttcttggttagattttgaatttgatccaaaagataatttatttgttagaattgataga
cgtagaaagctaccagtaagcattattttgcgggctcttaattataatacagaagaaata
ttaaacatattttttgagaaaaatatttttaaaatagaaaataacaaaattgtattagaa
ttagttcccgaaagactccgaggtgaaactgcatcatttaatattaaaaaaaatggaata
atatatgtagaaaaaggtcgtcgtattactgctaaacatattcaagaattaaaaaataat
aaaataaaatctatcacagttcctgttgaatatattcttggaagaattgtatctaaaaat
tatgtagataaaaaaacaggcgaaacaattatttcttctaatacagaattatctttagag
atattagaaaaattaaaaaaattaggtttctactctattgaaacattgtttactaatgat
ttagatcatggtccatatatatcagaaacgttacgaatagattcatctaatgatcgtatg
agtgctttaatagaaatttatcgagttatgaggccaggagaaccacctactaaagaggca
acagaaaatttattcgaaaatttatttttttctgaagacagatacgatctttctactgta
ggtagaatgaaatttaacagatcccttttacgtgaagaaactaaaggttcaagtacgtta
aataaagaagacatcattgatgttataaaaaaaattatcgatatccgaaatggaaaagga
gaagtagatgatattgatcatctaggaaatcgacgtgttagatcagtaggtgaaatggcg
gaaaaccaatttagaatcggtttagtaagagtggaaagagcagttaaagaaagattgtct
atcggcgatttagatgcgcttatgccacaagatatgattaatgctaaaccaatatcagct
gcggttaaagaattttttggttctagtcaattatcacaatttatggatcaaaataatcct
ttatcagaaattacgcataaaagaagaatttcagcattaggtttaggtggtttaaccaga
gaaagagcaggttttgaagttcgagatgtacatccaacacattatggacgagtatgtcct
atcgaaacaccagaaggtccgaatattggattaattaattctttatctgtgtacgctcaa
acaaattctcatggatttttagaaacaccttatcgaaaagtttgtaacggtttagttagt
gaggaaattcattatctatcagctatagaagaaggcaattatattattgcacaagctaat
actaatatcgataaaactggtttttttactgacgatttagtaacttgccgacataaaggc
gaatctagtttattcaaccgtaatcaagtaaattatatggatgtatctactcaacaaatt
gtatctgttggagcgtctttaattccttttcctgaacatgatgatgctaatagagcactg
atgggtgctaatatgcaacgtcaagcagtacctacccttaaaacagataaacctttgata
gggaccggaatggaacgagcagtagcagtagattctggtgttacagcagtagctaaaaga
agtggtgttgttcaatatgtagatgcttcacgtatagtaataaaagtagatgaaaaagaa
atgtattcaagagaagctggaatagatatttataatcttactaaatatactcgatctaat
caaaatacttgtattaatcaacagccctgcgttaatttaggcgaaaaaattaaaaaaggt
gatgttctagcagacggtccatctacagatttaggagaacttgcattaggacaaaatatg
cgtgtagcatttatgccatggaatggatacaattttgaagattcaatattagtctcagaa
agggttgttcaagaagatcgcttcaccacaattcatattcaggagttatcttgtatatca
agagatactaaattaggagcagaagaaattagttcagatataccaaatgtaggagaagct
gcattatctaaattagacgaatcaggaattgtttatattggagcagaagtaactggcggc
gacatactagttggcaaagtaactccaaaaggggaaacacaattaactccagaagaaaaa
ttattacgtgctatttttggtgaaaaagcatcagatgtaaaagattcttcattacgagta
ccgaatggagtatcaggtaccgtgatagatgtacaaatatttacaagagatggtgtaaaa
aaagataaaagagctttagaaattgaagacatgcaactgaagaaaatcaaacaagatctt
actgaagaattcaaaatatttgaatctagtttatttactcatattaaaaaaacttttata
tcgcttgatattgaaacaaaacagcttgatacactaccttttgaaaaatggttttctgta
gacattaaacaaaaagacaaaaaaaaagaaatagaaaaacttgctaaacaacatcatgaa
ttaaaagaagaatttaataaaaaaatagaaataaaacgtcaaaaaattacacaaggcgat
gatcttgctcctggtgttttaaaaatagttaaagtgtatttagcagttaaacgtcagatt
caacctggcgataaaatggcaggaagacatggaaataaaggagtaatttctaaaattaat
cctgttgaagatatgccttatgacgaaaatggtataccagttgatattgttttaaatcca
ttaggtgtaccctctcgtatgaatatcggtcagatactagaaacacatttaggtatggcg
gcaaaaggtattggtgataaaatcaatcatatgcttaaaacacaagaaaaaatatctaat
ttacgaaaatttatacaaaaagcttttgacttaggagataacctgagacaaaaagtaaat
ttagatacattttccaatgaagaaatattacgtttagcaaagaatttaaaaaatggcatc
cctatttctacaccggtatttgatggtgcacaagaaaatgaaataaaacaaatgttgaaa
tttgcaggtttacctacttcaggtcaaattatactttttgatggaagaacaggcgaaaaa
tttgaaagacctgttactgttggttatatgtatatgttaaaattaaatcacttagtagac
gataaaatgcatgctcgttctactggatcttatagtttagtgactcaacaaccattaggt
ggaaaagctcagtttggtggacagcgtttcggtgaaatggaagtttgggcattagaggcg
tacggagcgtcttatacgttacaagaaatgttaaccgtgaaatctgatgacgttaatgga
agaactaaaatgtataaaaatattgtagatggaaatcatcaaatggaacctggaatgcca
gaatcttttaatgtacttttaaaagaaattcggtcattagggattaatattgaactagaa
agcgaataa

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (2)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (7)   
   Pfam (6)   
   PROSITE (1)   
Others (1)   
   RIKEN-BUC (1)   
All databases (22)

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