KEGG   Burkholderia sp. RPE67: BRPE67_ACDS25350
Entry
BRPE67_ACDS25350  CDS       T03604                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
bue  Burkholderia sp. RPE67
Pathway
bue03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:bue00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    BRPE67_ACDS25350 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bue03021]
    BRPE67_ACDS25350 (rpoB)
   03400 DNA repair and recombination proteins [BR:bue03400]
    BRPE67_ACDS25350 (rpoB)
Enzymes [BR:bue01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     BRPE67_ACDS25350 (rpoB)
Transcription machinery [BR:bue03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     BRPE67_ACDS25350 (rpoB)
DNA repair and recombination proteins [BR:bue03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      BRPE67_ACDS25350 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_1 RNA_pol_Rpb2_45 RNA_pol_Rpb2_2 UbiD
Other DBs
NCBI-ProteinID: BAO87590
Position
1:complement(2738538..2742644)
AA seq 1368 aa
MQYSFTEKKRIRKSFAKRPIVHQVPFLLATQLESFQTFLQADTSSSQRKAEGLQAAFSSV
FPIVSHNGFARLEFVSYMLSPPAFNIKECQQRGLTYCSALRAKVRLVLLDKESPSKPVVK
EVKEQEVYMGEIPLMTPTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSAR
IIPYRGSWLDFEFDPKDVLYFRVDRRRKMPVTILLKAIGMTPEQILANFFVFDNFGLMSE
GAQMEFVPERLRGEVARFDIQDRDGNVIVTKDKRINAKHIRDLENAKTKFISVPEEYLLG
RVLAKNVIDPETGEVIANANEEITETVLEKLREAKVKDIQTLYTNDLDQGPYISSTLRID
ETADKMAARIAIYRMMRPGEPPTEEAVEALFNRLFYSEDAYDLSKVGRMKFNRRVGRDEI
IGPMTLQDDDILATIKILVELRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLVRVERA
VKERLGQAESENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRVSALG
PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAHLNEYGFLETPYRKV
VDSKVTDQIDYLSAIEEGRYVIAQANAAVAEDGTLTDELVSSREAGETLMVTPDRIQYMD
VAPSQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRPEKPVVGTGIERTVAVDSGT
TVQALRGGVVDYVDAGRIVIRVNDDEAVAGDVGVDIYNLIKYTRSNQNTNINQRPIAKVG
DKVARGDVLADGASTDLGELALGQNMLVAFMPWNGYNFEDSILISEKVVADDRYTSIHIE
ELNVVARDTKLGPEEITRDISNLAEVQLGRLDESGIVYIGAEVEAGDVLVGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGITRDKRAQQIIDDELK
RYRLDLNDQLRIVEGDAFQRLARMLNGKVANGGPKKLAKGTAIDLAYLEDLDHYHWFDIR
LADEEAAAQLEAIKDSIEQKRHQFDLAFEEKRKKLTQGDELPPGVLKMVKVYLAVKRRLQ
PGDKMAGRHGNKGVVSKIVPIEDMPYMADGRPADVVLNPLGVPSRMNVGQILEVHLGWAA
KGLGWRIGEMLQRQTKIEELRMFLTQIYNESGRKEELDSFSDDEILELAKNLREGVPFAT
PVFDGATEEEMGRALDLAYPDDIATNLGMNPSKNQVQLHDGRTGEPFERKVTVGYMHYLK
LHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTVK
SDDVTGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLDRN
NT seq 4107 nt   +upstreamnt  +downstreamnt
atgcaatattccttcaccgagaagaagcgtattcgcaagagtttcgcgaagcgccccatc
gttcaccaagttcccttcttgctggcgacccagcttgaatcattccagacgtttctgcaa
gcagacacgtcttcttcgcagcgcaaggcagaaggcttgcaggctgcgttcagctcagtt
ttcccgattgtctcgcacaacggcttcgcgcggctcgagttcgtcagctacatgctgtcg
ccgcccgcgttcaacatcaaggaatgtcagcagcgtggcctgacgtactgctcggcgctg
cgcgcgaaagtgcgcctggttctgctcgacaaggaatcgccgagcaagccggtcgtcaag
gaagtgaaggaacaggaagtgtacatgggcgaaattccgctcatgacgccgaccggttcg
ttcgtcatcaacggcactgagcgcgtgatcgtgtcgcagctgcaccgttcgcctggcgtg
ttcttcgagcacgacaagggcaagacgcacagctccggcaagctgctgttctcggcgcgc
atcatcccttaccgtggttcgtggctcgatttcgagttcgatccgaaggacgtgctgtac
ttccgcgtcgaccgccgtcgcaagatgccggtcacgattctgctgaaggccatcggcatg
acgccggagcagatcctcgcgaacttcttcgtgttcgacaacttcggcctgatgagcgaa
ggcgcgcagatggaattcgttccggagcgtctgcgcggtgaagtggcgcgctttgacatt
caggatcgcgatggcaacgtcatcgtgacgaaggacaagcgcatcaacgcgaagcacatt
cgcgacctcgaaaacgccaagacgaagttcatctcggtgcccgaggaatatctgctcggc
cgcgtgctggcgaagaacgtgatcgatccggaaacgggcgaagtgattgcgaacgccaac
gaggaaatcaccgaaacggttctcgaaaagctgcgcgaggcaaaggtcaaggacatccag
acgctgtacacgaacgatctggatcagggtccgtacatctcgtcgacgctgcgtatcgac
gaaaccgccgacaagatggccgcccgcatcgcgatctatcgcatgatgcgtccgggcgag
ccgccgaccgaagaagcggtcgaggcgctgttcaaccgtctgttctacagcgaagacgcg
tacgacctgtcgaaggtcggccgtatgaagttcaaccgccgcgtgggtcgcgatgaaatc
atcggaccgatgacgctgcaggacgacgacatcctcgcgacgatcaagatcctcgtcgag
ctgcgcaacggcaagggcgaagtggacgatatcgaccacctcggcaatcgtcgcgtgcgt
tgcgtcggcgaactcgcggagaaccagttccgcgccggtctcgtgcgtgtcgaacgcgcg
gtgaaggaacgcctcggccaggccgaaagcgaaaacctgatgccgcacgacctgatcaac
tcgaagccgatttcgtcggcgatccgcgagttcttcggttcgtcgcagctttcgcagttc
atggaccagaccaacccgctgtcggaaatcacgcacaagcgtcgcgtgtccgcactgggc
ccgggcggtctgacgcgcgagcgcgcgggcttcgaagtccgcgacgtgcacccgacgcat
tatggccgcgtgtgcccgatcgaaacgccggaaggtccgaacatcggtctgatcaactcg
ctcgcgctctacgcgcacctgaacgaatacggcttcctcgaaacgccgtaccgcaaggtc
gtggacagcaaggtgaccgaccagatcgactatctgtcggcgatcgaagaaggccgctat
gtgatcgcgcaggcgaacgcggcggtggccgaagacggcacgctgaccgacgaactcgta
tcgtcgcgtgaagcgggcgaaacgctgatggtcacgccggaccgcatccagtacatggac
gtggcgccgtcgcagatcgtgtcggtggccgcatcgctgattccgttccttgaacacgac
gacgcgaaccgcgcgttgatgggctcgaacatgcagcgtcaggccgtgccttgcctgcgt
ccggaaaagccggtcgtcggtacgggcatcgagcgcacggttgcggtcgactcgggcacg
acggttcaggcgctgcgtggcggtgtcgtggattacgtcgacgcgggccgtatcgtgatt
cgcgtgaacgacgacgaagccgtggccggcgatgtcggcgtggacatctacaacctgatc
aagtacacgcgttcgaaccagaacacgaacatcaaccagcgtccgatcgcgaaggtcggc
gacaaggttgcgcgtggcgacgtgctggctgacggcgcatcgaccgatctgggcgaactc
gcgctcggccagaacatgctggtcgcgttcatgccgtggaacggctacaacttcgaagac
tcgatcctgatctcggagaaggtcgttgcggacgatcgctacacgtcgatccacatcgaa
gaactgaatgtcgttgcgcgcgacacgaagctcggaccggaagaaatcacgcgcgatatc
tcgaacctggcggaagtgcaacttggccgactggacgagtcgggcatcgtgtacatcggc
gcggaagtcgaagcgggcgacgtgctcgtgggcaaggttacgcctaagggcgaaacccag
ctcacgccggaagaaaagctgctgcgcgcgatcttcggcgagaaggcatcggacgtgaag
gacacgtcgctgcgcgtgccgtcgggcatgagcggcacggtcatcgacgtgcaagtgttc
acgcgcgaaggcatcacgcgcgacaagcgcgcgcaacagatcatcgacgatgaactgaag
cgttatcgcctcgatttgaacgaccagctgcgcatcgtggaaggcgacgctttccagcgt
ctcgcgcgcatgctgaacggcaaggtcgcgaacggcggtccgaagaagctcgcgaagggc
acggcaatcgacctcgcgtacctcgaagatctcgaccactaccactggttcgacatccgc
ctcgcggacgaagaagcggcggcacagctggaagcgatcaaggattcgatcgagcagaag
cgtcaccagttcgacctcgcgttcgaagagaagcgcaagaagctcacgcaaggcgacgaa
ctgccgccgggcgtgctgaagatggtcaaggtgtatctcgcggtcaagcgtcgtctgcag
cctggcgacaagatggcgggccgtcacggcaacaagggtgtcgtgtcgaagatcgtgccg
atcgaagacatgccgtacatggccgatggtcgtccggccgacgtcgtgctgaacccgctc
ggcgtgccgtcgcggatgaacgtgggtcagattctcgaagtgcatctgggctgggccgcg
aagggtctgggctggcgcatcggcgaaatgctgcagcgtcagacgaagatcgaagaactg
cgcatgttcctgacgcagatctacaacgagtcgggccgcaaggaagagctggacagcttc
tccgacgacgaaatcctcgaactcgcgaagaatctgcgcgaaggcgtgccgttcgccacg
ccggtgttcgacggtgcgaccgaagaggaaatgggccgcgcgctggatctggcgtacccg
gacgatatcgccacgaacctcggcatgaacccgtcgaagaatcaggttcaactgcacgat
ggccgcacgggcgaaccgttcgagcgcaaggtcacggtcggctacatgcactacctgaag
ctgcaccacttggtcgacgacaagatgcacgcgcgttcgaccggcccgtactcgctcgtc
acgcagcagccgctgggtggtaaggcgcagttcggcggccagcgcttcggtgagatggaa
gtgtgggcgctggaagcgtacggcgcatcgtatgtgctgcaagaaatgctgacggtcaag
tcggacgacgtcaccggccggacgaaggtgtatgagaacctcgtcaagggcgatcacgtc
atcgacgcgggcatgccggaatccttcaacgtgttggtgaaggaaatccgctcgctcggt
attgatatcgatctggaccgcaactaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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