KEGG   Burkholderia sp. KJ006: MYA_1371
Entry
MYA_1371          CDS       T02110                                 
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
buk  Burkholderia sp. KJ006
Pathway
buk02024  Quorum sensing
buk03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:buk00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    MYA_1371
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    MYA_1371
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:buk03019]
    MYA_1371
   03036 Chromosome and associated proteins [BR:buk03036]
    MYA_1371
Messenger RNA biogenesis [BR:buk03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     MYA_1371
Chromosome and associated proteins [BR:buk03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    MYA_1371
SSDB
Motif
Pfam: Hfq LSM
Other DBs
NCBI-ProteinID: AFJ85733
UniProt: I2DM57
Position
1:complement(1472640..1473215)
AA seq 191 aa
MANPAESHPQNDFINSARKERKRVEIYLVNGIRLTGCIESFDQYLVMLRTPVGLQGIYKR
AISTIQLDTGGSRPGGPRGPRPGGRPGGREGGGHSPYGSHGGSRESRGDGGYGSREPREG
YGSREPREGYGSREPREGYGAPREGYGAPRESYGAPRDTSDAPGSSAPSDSRGGTGPVIV
TRRRRIVPDGQ
NT seq 576 nt   +upstreamnt  +downstreamnt
atggccaatcccgcagaatcccatccgcaaaacgacttcatcaattcggcacgcaaggaa
cgtaagcgtgttgaaatctatctcgtcaacggcattcgtctgacgggttgcatcgagtcg
ttcgatcagtacctggtgatgctgcgcacccctgtgggtctgcaaggcatctacaagcgc
gcgatttcgacgatccagctcgacacgggcggctcgcgtcccggcggcccgcgcggcccg
cgtcccggcggccggccgggcggccgtgaaggcggcggccacagcccgtacggttcgcac
ggcggctcgcgcgagtcgcgcggcgacggcggctacggctcgcgtgaaccgcgcgagggc
tacggttcccgcgaaccgcgcgaaggatacggctcgcgtgagccgcgggaaggctacggc
gcaccgcgcgaaggttatggcgcaccgcgcgaaagctacggcgcgccgcgcgataccagc
gacgcaccgggcagcagcgcgccgtccgattcgcgtggcggcaccgggccggtgatcgtc
acccggcgccggcgaatcgtgccggacggccagtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (12)   

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