KEGG   Beta vulgaris (sugar beet): 104900925
Entry
104900925         CDS       T03548                                 
Name
(RefSeq) E3 ubiquitin-protein ligase COP1
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
bvg  Beta vulgaris (sugar beet)
Pathway
bvg04120  Ubiquitin mediated proteolysis
bvg04712  Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:bvg00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    104900925
 09150 Organismal Systems
  09159 Environmental adaptation
   04712 Circadian rhythm - plant
    104900925
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:bvg04121]
    104900925
Enzymes [BR:bvg01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     104900925
Ubiquitin system [BR:bvg04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    104900925
  Multi subunit Ring-finger type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     104900925
SSDB
Motif
Pfam: WD40 zf-C3HC4_2 zf-C3HC4 zf-C3HC4_3 WD40_like zf-RING_2 zf-RING_UBOX zf-C3HC4_4 U-box zf-RING_5 DUF1664 DUF4349 zf-RING_10 zf-Nse
Other DBs
NCBI-GeneID: 104900925
NCBI-ProteinID: XP_010686756
Position
8:6700121..6710383
AA seq 685 aa
MAETSIGEGALVPFVKADSPHETSDGGESISGDKDFLCPICMQIIKDAFLTACGHSYCYM
CIFTHLRNKSDCPCCSRFLTPKLIFPNFALDKILKKMSNYQFAKSASSSEKLRRALLQGC
DVSVKDLDCLLSQLAEKKRKMEQEEAETNLQVLLEFLVCLRKRKLEELSQIQNDLQYIKE
DIEAVRKHKIDLGNVNKNCTVRLRFSGDDSDTKGDCPIIPRPVAGNSGTQQLIFSGSQHN
GRENVGPLCSQEIIENDGCAGSESQQQAPTERFTARKRQVEAQLTDLQECYLQKRRHWAK
QLQGGGRDLNNINSLGYHAGLRDFQSVLTSCTRYSQLRVISELRLGNVFQPANIISSIEF
DRDHELFATAGVSKRIKIFELSSVIDEPAEVHCAVVDIATRSKLSCLSWNKYTKHCIASS
DYEGIVTVWDVATRQSVGEYEEHEKRAWSVDFSCTEPSLLVSGGDDCKVSFLLEIGQIFL
FPSMSCGNKWEFTNMKVKVWCTKQERSVLNIDMNANICSVKCNPGSSMHVAVGSADHNIH
YYDLRNITQPVHVFSGHRKAVSYVKFLSTNELASASTDSTLRLWDVKENKLLQIYRGHMN
EKNFVGLTSNSEYLSCGSETNEVFVYHKAISKPVARYKFNTSEFHDADEDRGSHFISAVC
WKSDGSPVIMAANSQGNVKVLALAT
NT seq 2058 nt   +upstreamnt  +downstreamnt
atggcggaaacctccattggagaaggagctctagttccttttgtgaaagcagattctccg
catgagacctccgatggcggagaatcaatctccggcgacaaagattttctctgtcctatt
tgcatgcagattataaaggacgcttttcttactgcttgcggccatagctactgctacatg
tgcatctttactcaccttcgtaacaagagtgattgcccttgctgcagtcgttttctcact
cctaagcttattttccctaattttgccctcgacaagatattaaagaagatgtctaattat
caatttgcaaaaagcgcctcctcgagtgaaaaactacgccgggcactgctgcagggttgt
gatgtgtctgtaaaggatcttgactgccttttgtctcaacttgcggaaaagaaaagaaag
atggagcaagaggaggctgagaccaatttgcaagttctccttgagtttttggtgtgctta
aggaaaagaaagttggaagagcttagtcagatacaaaatgatcttcagtacatcaaagag
gatatagaagctgttagaaaacacaaaatagatttggggaatgtaaacaagaattgtact
gtgagattgagatttagtggggatgactctgatacaaagggtgattgtccgataatacca
aggcctgtggctggtaattctggcacacaacaattgatattttcgggaagtcaacataat
ggaagagaaaatgtaggtcctctatgctctcaggaaattatcgaaaatgatggctgtgct
ggctcagaatcgcaacagcaggctccaacagaaagatttacagcaaggaaaaggcaggtt
gaggcgcagctcactgacctgcaagaatgttacctgcaaaaaaggagacattgggccaag
cagttacaaggtggaggaagggatctgaataatataaatagcttaggttatcatgcagga
cttagggatttccagtctgtgctaacttcctgtactcgatacagccaattaagggttatt
tcagagttgagacttggcaatgtttttcagcctgccaatattatttccagcatagaattt
gacagagaccacgaattgtttgcaactgctggtgtctctaagcgtatcaaaattttcgag
ttatcctctgtgattgatgaaccagcagaagtgcactgtgctgttgttgacattgccaca
agatctaaactaagttgtttgagttggaataagtataccaaacattgtattgcaagcagt
gactacgaggggattgtaactgtttgggatgttgctactcgtcagagtgttggagaatat
gaggagcatgaaaaacgagcttggagtgtggacttttcgtgcactgaaccttcgctgttg
gtatctggcggggatgactgcaaggtttcctttctactagaaattggacagatttttctt
ttcccaagcatgagttgtgggaacaagtgggagtttactaacatgaaggttaaagtctgg
tgcaccaaacaggaaaggagtgttcttaatattgacatgaatgcaaatatttgttctgtg
aagtgtaatcctggatctagcatgcatgtggcggtcggctctgcagatcataatattcac
tattatgacttgagaaatattacccagcctgttcatgtcttctctggtcacagaaaagct
gtttcatatgttaaattcttgtctactaatgagcttgcttctgcatcaactgatagcaca
ttgcgcttgtgggatgtcaaggaaaataagctgcttcagatatatagaggccacatgaat
gagaagaattttgtaggcctcacttcaaacagcgagtacctttcttgtggcagtgagaca
aacgaagtctttgtttatcacaaggctatctctaagcccgttgcccggtataaattcaat
acatctgaattccatgatgctgatgaggatcgaggatcacacttcattagtgcagtttgt
tggaagagtgatggtagcccagtgatcatggctgctaacagtcaaggaaatgtcaaagta
cttgctcttgctacctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (23)   
   KEGG ORTHOLOGY (1)   
   RefGene (19)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (14)   
   Pfam (14)   
All databases (52)   

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