KEGG   Burkholderia vietnamiensis G4: Bcep1808_1931
Entry
Bcep1808_1931     CDS       T00493                                 
Name
(GenBank) DNA ligase, NAD-dependent
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
bvi  Burkholderia vietnamiensis G4
Pathway
bvi03030  DNA replication
bvi03410  Base excision repair
bvi03420  Nucleotide excision repair
bvi03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:bvi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Bcep1808_1931
   03410 Base excision repair
    Bcep1808_1931
   03420 Nucleotide excision repair
    Bcep1808_1931
   03430 Mismatch repair
    Bcep1808_1931
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bvi03032]
    Bcep1808_1931
   03400 DNA repair and recombination proteins [BR:bvi03400]
    Bcep1808_1931
Enzymes [BR:bvi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     Bcep1808_1931
DNA replication proteins [BR:bvi03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     Bcep1808_1931
DNA repair and recombination proteins [BR:bvi03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     Bcep1808_1931
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Bcep1808_1931
   MMR (mismatch excision repair)
    DNA ligase
     Bcep1808_1931
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      Bcep1808_1931
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD HHH PTCB-BRCT MctB BRCT_2 5_3_exonuc Mst1_SARAH
Other DBs
NCBI-ProteinID: ABO54934
UniProt: A4JF81
Position
1:complement(2104780..2106855)
AA seq 691 aa
MARTQAEPPASQPDARAAWLRDQLERANYAYYVLDQPDLPDAEYDRLFGELQQLEADHPE
LVTPDSPTQRVGGAVASGFTPVVHDAPMLSLNNGFSDDDIVAFDKRVADALDKPTDLAGS
VTDPVEYACELKFDGLAISLRYERGVFVQASTRGDGTTGEDVTENVRTIRSIPLKLKGAH
VPALLDVRGEVLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITAQRPLSFF
SYGIGVLDGMPMPDTHSALLDWYEALGLPVNRERAVVRGAQGLLEFFRKVGERRESLPYD
IDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARL
EPVFVGGATVTNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVGALLERRPVDAAEFV
MPTECPVCGSKIERLPDEAIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQLV
ELNLVRTPADLFNLGFATLAELDRFAEKSAQNLLDSLEKAKHTTLARFIYGLGIRHVGES
TAKDLAKHFGSLDPIMDASIEELLEVNDVGPIVAESIHQFFAEEHNRTVIDQLRAPGKVT
WPEGPPAPKAPQGVLAGKTVVLTGTLPTLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGA
EAGSKLAKAEELGIPVLDEDGLHQLLEGNTQ
NT seq 2076 nt   +upstreamnt  +downstreamnt
atggcccgaacccaagccgaaccgccagccagccagcccgacgcgcgcgccgcgtggctg
cgcgatcaactcgagcgggcgaactacgcctactacgtgctcgatcagccggacctgccc
gacgccgaatacgatcgactgttcggcgagctgcagcaactcgaagccgatcatcccgaa
ctcgtgacgcccgattcgccgacgcagcgcgtcggcggcgcagtggcgagcgggttcacg
ccggtcgttcacgacgcgccgatgctgtcgctgaacaacggcttcagcgacgacgacatc
gtcgcgttcgacaagcgcgtcgccgatgcgctcgacaagccgaccgatctcgccggctcg
gtgacggaccccgtcgaatacgcgtgcgagctgaagttcgacgggctcgccatttcgctg
cgctacgagcgcggcgtgttcgtgcaggcgtcgacgcgcggcgacggcacgaccggcgag
gacgtgaccgagaacgtgcgcacgatccgctcgattccgctgaagctgaagggcgcccac
gtgcccgcgctgctcgacgtgcgcggcgaagtgctgatgttcaaacgcgatttcgcgcgc
ctgaacgaacgccagcgggcggccgagcagcgcgaattcgcgaacccgcgcaacgcggcg
gccggcagcctgcgccagctcgatccgaagatcaccgcgcagcgtccgctgtcgttcttc
tcgtacgggatcggcgtgctcgacgggatgccgatgcccgatacccacagcgcgctgctc
gactggtacgaagcgctcggcctgccggtgaaccgcgaacgcgccgtcgtgcgcggcgcg
caggggctgctcgaattcttccgcaaggtcggcgagcggcgcgaatcgctgccgtacgac
atcgatggcgtcgtctacaaggtgaaccggcgcgacgagcaggaccgcctcggcttcgta
tcgcgcgcgccgcgcttcgcgctcgcgcacaaattccccgcgcaggaagcgctgacgaag
ctcgtcgcgatcgacgtgcaggtcggccgcaccggcgcgatcacgccggtcgcgcggctc
gagccggtgttcgtcggcggcgcgacggtgaccaacgcgacgctgcacaacgaggacgaa
gtgcgccggaaagacatccggatcggcgacaccgtgatcgtgcggcgcgcaggcgacgtg
attccggaggtcgtcggcgcgctgctcgagcgccggccggtcgacgcggccgaattcgtg
atgccgaccgagtgcccggtgtgcggctcgaagatcgagcgcctgccggacgaggcgatc
gcgcgctgcacgggcggcctgttctgcccggcgcagcgcaagcaggcgctgtggcacttc
gcgcagcgccgcgcgctcgacatcgacgggctcggcgagaagatcatcgatcagctggtc
gagctgaacctcgtgcgcacgccggccgacctgttcaatctcggtttcgcgacgctcgcg
gagctcgaccgcttcgccgaaaagtccgcgcagaatctgctcgattcgctcgagaaggcg
aagcacacgacgctcgcgcgcttcatttacgggctcggcattcgccacgtcggtgaatcg
accgcgaaggatctcgcgaagcatttcggctcgctcgatccgatcatggacgcgtcgatc
gaggaactgctcgaagtcaacgacgtcgggccgatcgtcgccgagtcgatccaccagttc
ttcgcggaggagcacaaccgtaccgtgatcgaccagttgcgcgcgcccggcaaggtcacg
tggccggaagggccgcccgcgccgaaggcgccgcaaggcgtgctcgccggcaagacggtc
gtgctgaccggcaccttgccgacgctcacgcgcgacgcggcgaaggagatgctcgaagcg
gccggcgcgaaggtggccggatcggtatcgaagaagacggattacgtggtcgcgggcgcc
gaagccggcagcaagctcgcgaaggccgaggaactcggcatcccggtgctcgacgaagac
ggactgcaccaactcctggagggcaatacgcaatga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (12)   
   Pfam (12)   
All databases (33)   

Download RDF
DBGET integrated database retrieval system