KEGG T00493: Bcep1808

Burkholderia vietnamiensis: Bcep1808_5735

Entry

Bcep1808_5735 CDS T00493

Definition

DNA primase, small subunit

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

bvi Burkholderia vietnamiensis

Pathway

bvi03410	Base excision repair
bvi03420	Nucleotide excision repair
bvi03430	Mismatch repair
bvi03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:bvi03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:bvi03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:bvi03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:bvi03450]

SSDB

Motif

Pfam:

LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

3:320282..323263

AA seq 993 aa
MAGKLDPYRRKRHFDATPEPAGARRRAKPQPQPDGRAAPRRPLRFVIQEHHARRLHYDFR
LELDGTLKSWAVPKGPSFDPSVKRLAVHVEDHPVEYASFEGQIPAGHYGAGSVVVWDEGT
WTPDGGVAGARSGYRAGKLTFRLDGEKLHGGWALVRSGRQEGRQEQWLLIKERDEAARSA
DEFDVVGERPGSVHAGEGGPSSAAGGAGADSHDATARTGGGGKHATQTGKRAARSGERAA
RAAERADDRDRATARAHVRDGDRAAARDRAAASDPGAARVRTRTGDGDADRTPRRTRTPD
HASASDRDPSTVEGAVRAPLPERIAPQLATLVDAPPADADWRYELKFDGYRILARIAGKG
ARRHVKLMTREGRDWTAKLRAQRDALAALPVDDAWLDGEAVVLGANGLPDFQALQNAFGA
GQSDDVTLFVFDLPYLDGYDLRDAPLAARRALLEPLVADSDPTRLRFSPDLGDDVASLIA
SACDTGLEGLIGKRAESRYRGGRSAAWIKLKCRRRQEFVIGGYTEPSGSRHGFGALLLGV
HDAPPAGKRARAAAPLRYVGRVGTGFDARALDRLAALLRRHERDTTPFEPAPRERTRTRV
HWVEPTLVAECEFAEWTGDGIVRQAAFIALRDDKPATQIVREMPKHVETEGAMERQQSTP
DAGHERKRASRAADDTGKRKPNARASASARNAREDGDAELSGRVRITHPERVLDPASGTR
KIDLARYWQWVAPWLLPDLKGRPVSLVRAPGDITGELFFQKHAERREIPFVTQHPGLDPG
HGALLSLDSVDALLGAAQMGTIELHTWNAHASNIERPDRIVFDLDPDPALPWSAMIEAAQ
LVRGLLDELGLRSFCKTSGGKGLHVVVPITRHMGWDDVKAFSRALAQHVAGALPERFTAT
MGPRHRRGKIFIDYLRNGRGASTIAAYSVRARPGLGVSVPLHWDEVPDTTGGAQWTIDTL
HERLERLKRDPWEGYDDTRQRITAQMRARLDGA

NT seq 2982 nt +upstreamnt +downstreamnt
atggcaggcaagctcgatccgtatcgccgcaaacgccatttcgacgcgacgcccgaaccc
gcgggtgcgcggcggcgcgcgaagccgcagccgcagcccgatgggcgcgcggccccgcgc
cggccgttgcgtttcgtgatccaggaacatcatgcgcggcggctgcactacgacttccgg
ctcgaactcgacggcacgctgaaatcctgggcggtgccgaaggggccgagcttcgatccg
tcggtgaagcgtctggccgtgcacgtcgaggatcatccggtcgaatacgcgtcgttcgaa
gggcagattccggccggccactacggcgcagggtcggtcgtcgtgtgggacgaaggcacg
tggacgcccgacggcggcgtcgcaggcgcgcgcagcggctatcgcgcgggcaagctgacg
ttccggctcgatggcgagaagctgcacggcggctgggcgctggtgcgcagcggacggcag
gagggacgccaggagcagtggctgctgatcaaggagcgcgacgaagcggcgcgcagcgcc
gatgaattcgacgtggtcggcgagcggccgggcagcgtgcacgccggtgagggcgggcca
tcgtcggcggcaggcggcgcgggcgcggactcgcacgatgcgacggcgcgcacgggtggc
ggcggcaagcacgccacgcaaactggcaagcgcgccgcgcgaagcggcgagcgcgcggca
cgagcggccgagcgcgccgatgaccgcgatcgcgccaccgcccgcgcgcacgttcgcgat
ggcgaccgcgccgcggcccgcgaccgtgctgccgcaagcgaccctggcgccgcccgcgtc
cgaactcgcaccggcgacggcgacgccgaccgcacccctcgccgtacgcgtactcccgac
cacgcatcggccagtgaccgcgatccctccaccgtcgaaggcgccgtgcgcgcgccgctg
cccgagcgcatcgcgccgcaactggcgacgctggtcgacgcgccgcccgccgacgccgac
tggcgctacgagctgaaattcgacggctaccggatcctcgcgcgcatcgccggcaagggc
gcgcgtcgccacgtgaagctgatgacgcgcgaaggccgcgactggaccgcgaagctgcgc
gcgcagcgcgatgcgctcgcggcgctgcccgtcgacgacgcgtggctcgacggcgaggcc
gtcgtgctcggcgcgaacggcctgcccgacttccaggcgttgcagaacgcgttcggcgcc
gggcagtcggacgacgtcacgctgttcgtcttcgacctgccgtatctcgacggttacgac
ctgcgcgatgcgccgctggccgcgcgccgcgcgctgctcgagccgctcgtcgccgacagc
gacccgacccggctgcgcttttcgcccgatctcggcgacgacgtcgcgtcgctgatcgcg
agcgcctgcgacaccggcctcgaagggctgatcggcaagcgggcggaatcgcgctatcgc
ggcggacgctcggcggcatggatcaagctcaaatgccggcgccggcaggaattcgtgatc
ggcggctacaccgagccgtcgggcagccgccacggcttcggcgcgctgctgctcggcgtg
cacgacgcgccgccggccggcaagcgcgcgcgcgcggccgcgccgctgcgctacgtcggc
cgcgtcggcaccggcttcgacgcgcgcgcgctcgaccggctcgccgcgctgctgcgccgg
cacgagcgcgacacgacgccgttcgagccggcgccgcgcgaacgcacgcgcacgcgcgtg
cactgggtcgagccgacgctcgtcgccgaatgcgaattcgcggaatggaccggcgacggc
atcgtgcggcaggccgcgttcatcgcgttgcgcgacgacaagccggcgacgcagatcgtc
cgcgaaatgccgaagcatgtggaaacggagggagcgatggagcgacagcagagcacgccc
gacgcgggccatgaacgcaagcgcgcgtcgcgcgccgccgacgatacgggcaagcgcaag
ccaaacgcgcgcgcgagcgcgtccgcgcgcaacgcacgtgaggacggcgacgcggagctg
tccggccgcgtgcgcatcacgcatcccgagcgcgtgctggacccggcgagcggcacgcgc
aagatcgacctcgcgcgctactggcaatgggtggcgccgtggctgctgcccgacctgaaa
gggcggcccgtgtcgctcgtgcgcgcaccgggcgacatcaccggcgagctgttcttccag
aagcacgccgagcgccgcgagattccgttcgtcacgcagcaccccgggctcgatcccggg
catggcgcgctgctgtcgctcgacagcgtcgatgcgctgctcggcgcggcccagatgggc
acgatcgaattgcatacgtggaacgcgcatgcatcgaacatcgagcggcccgatcgcatc
gtgttcgacctcgatcccgatccggcgctgccgtggagcgcgatgatcgaggccgcgcag
ctggtgcgcgggctgctcgacgagctcggcctgcgctcgttctgcaagacgagcggcggc
aaggggctgcacgtcgtcgtgccgatcacgcggcacatgggctgggacgacgtgaaggcg
ttctcgcgcgcgctcgcgcagcacgtcgcgggcgcgctgcccgagcgcttcaccgcgacg
atggggccgcggcaccggcgcggcaagatcttcatcgactacctgcgcaacggtcgcggc
gcgagcacgatcgccgcctactcggtgcgcgcacggccggggctgggcgtatcggtgccg
ctgcactgggacgaggtgcccgacacgacgggcggcgcgcagtggaccatcgacacgctg
cacgagcgcctcgagcgcttgaagcgcgacccgtgggaaggctacgacgacacgcgccag
cgcattaccgcgcagatgcgcgcgcggctcgacggggcgtga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-BVI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (17)   

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