KEGG   Barnesiella viscericola: BARVI_13040
Entry
BARVI_13040       CDS       T02986                                 
Name
(GenBank) excinuclease ABC subunit B
  KO
K03702  excinuclease ABC subunit B
Organism
bvs  Barnesiella viscericola
Pathway
bvs03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:bvs00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    BARVI_13040
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bvs03400]
    BARVI_13040
DNA repair and recombination proteins [BR:bvs03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     BARVI_13040
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      BARVI_13040
SSDB
Motif
Pfam: UvrB_inter UvrB Helicase_C ResIII DEAD UVR Kinesin Microtub_bd AAA_30
Other DBs
NCBI-ProteinID: AHF13500
UniProt: W0ERQ5
Position
complement(3061858..3063942)
AA seq 694 aa
MDFKLISPYRPTGDQPEAIDELSRGVLDGTPYQTLLGVTGSGKTFTMANVIERVQKPTLI
LSHNKTLAAQLYNEFKGFFPENAVEYFVSYYDYYQPEAYIPSTDTYIEKDLAINEEIDRL
RLSTTSALLSGRKDVIVVSSVSCLYGIGNPEDFHSNVIEVKVGDNIGRNRLLRHLVDSLY
SRNEVELNRGNFRVKGDTVDIYLAYDDTIVRIEFWGEEIEAIRTIDPATGSSTGSFDAYK
IFPANLFVTTKERIDKAIGEIEIDLGKQVEFFKSIGKELEAKRLYERVTYDVEMIREIGH
CSGIENYSRYFDGREAGTRPFCLLDYFPKDFLTIIDESHVTVPQIRAMYGGDRSRKMNLV
EYGFRLPAAVDNRPLKFDEFESLARQIIYVSATPADYELEKSEGVVVEQVIRPTGLLDPV
IEVRPSLNQIDDLLEEIQLRIERDERVLVTTLTKRMAEELNSYLAKLDISCNYIHSDVDT
LDRIKILDDLRAGVYDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTVGRA
ARNLNGRVIMYADRITESMQKTIDETNRRREKQLAYNEEHHITPKAIQKAKSSILGATAE
AQPQPQPAKPAKGAKPAPAARAYSDEYLEHVDVAADPVVKYMNREQLQKAIERTRRQMVE
AAKKMEFIEAAQYRDELIKLEDLLQQAAADKPTA
NT seq 2085 nt   +upstreamnt  +downstreamnt
atggatttcaaactgatctcaccctatcgccccacgggcgaccaacccgaagctatcgac
gaactgagtcggggtgtgctcgacggcacgccctaccagacgttgctgggtgtcacgggc
tcgggaaagaccttcaccatggccaacgtaatcgagcgggtacagaaacctaccctgatc
ctgagccataacaaaactctggcggcccagctctacaacgagttcaaggggttcttcccc
gagaatgccgtcgagtatttcgtctcctactacgactactaccagcccgaggcctatata
ccctcgaccgacacctatatcgagaaagacctggccatcaacgaggagatagaccgactg
cggctctccaccacctcggccctgctgtcggggcggaaagatgtgattgtggtctcgtcg
gtatcgtgcctctacggcatcggcaaccccgaggatttccacagcaacgtcatcgaggtg
aaggtgggcgacaacatcggccgcaaccggctgttgcggcatctggtcgactcgctctac
tcgcgcaacgaggtggagctcaaccggggcaatttcagggtgaagggcgacacggtcgac
atctacctggcctacgacgataccatcgtgcgcatcgagttctggggcgaggagatcgaa
gcgatacgcaccatcgacccggccacggggagcagcacggggagcttcgacgcctacaag
attttcccggccaacctgtttgtcacgaccaaagagcgcatcgacaaggccatcggcgag
attgaaatcgacctgggcaagcaggtggagttcttcaaatccatcgggaaggaactcgaa
gccaaacggctctacgaaagggtgacctacgacgtggagatgattcgcgagataggccac
tgctcgggcatcgagaactactcgcgctacttcgacggccgcgaggcgggcacccggccc
ttctgcctgctcgactactttcccaaggattttctcaccatcatcgacgagagccacgtg
accgtaccgcaaatccgagccatgtacggcggcgaccgctcccgcaagatgaatctggtg
gaatatggcttccgcctgccggcagcggtggacaaccgccccttgaaattcgacgagttc
gaaagcctggcgcggcagattatctacgtgagtgccacaccggccgactacgaactcgaa
aagagcgagggtgtcgtggtcgaacaggtgattcgacctaccggtctgcttgacccggtc
atcgaggtacggcccagcctcaaccagatagacgacctgctggaagagatacagttgcgc
atcgagcgcgacgagcgggtgctggtcaccacgctcaccaaacgcatggccgaggagctg
aacagctacctggccaagctcgacatcagttgcaactacatacactccgacgtcgacacc
ctcgaccgcatcaagattctcgacgacctgcgggccggggtctacgacgtgctcatcggg
gtcaacctgctgcgcgagggactcgacctgcccgaagtgtcgctggtggctatcctcgat
gccgacaaggaggggttcctgcgctcgcaccggtcgctcacccagacggtgggacgggcc
gcgcgcaacctcaacggacgggtcatcatgtatgccgaccgcattaccgagagcatgcag
aagaccatcgacgagaccaaccgccgacgcgagaaacagttggcctacaacgaggagcac
cacatcacccccaaggccatacagaaggccaagagttcgatactcggtgccaccgccgag
gcccagccgcaaccccaaccggccaagccggcaaagggggcgaaaccggctccggcagcc
cgggcatacagcgacgagtacctcgaacatgtcgatgtggcggccgaccccgtggtgaaa
tacatgaatcgcgaacaactgcaaaaggccatcgagcgcacccgccgacagatggtcgag
gcggccaagaagatggagtttatcgaggcggcccagtatcgcgacgaactgataaaactg
gaagatttactacaacaggcagcagccgacaagcccactgcctaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (127)   
   KEGG ORTHOLOGY (1)   
   RefGene (124)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (141)   

Download RDF
DBGET integrated database retrieval system