KEGG   Bacteroides xylanisolvens: BXY_18580
Entry
BXY_18580         CDS       T02579                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
bxy  Bacteroides xylanisolvens
Pathway
bxy03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:bxy00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    BXY_18580
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bxy03021]
    BXY_18580
   03400 DNA repair and recombination proteins [BR:bxy03400]
    BXY_18580
Enzymes [BR:bxy01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     BXY_18580
Transcription machinery [BR:bxy03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     BXY_18580
DNA repair and recombination proteins [BR:bxy03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      BXY_18580
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid Apocytochr_F_C Peptidase_M23
Other DBs
NCBI-ProteinID: CBK66957
UniProt: D6CXQ5
Position
complement(2179972..2184255)
AA seq 1427 aa
MAFRKENKTKSNFSKISIGLASPEEILENSSGEVLKPETINYRTYKPERDGLFCERIFGP
IKDYECHCGKYKRIRYKGIVCDRCGVEVTEKKVRRERMGHIQLVVPVAHIWYFRSLPNKI
GYLLGLPTKKLDSIIYYERYVVIQPGVKAEDGVAEYDLLSEEEYLDILDTLPKDNQYLED
NDPNKFVAKMGAEAIYDLLARLDLDALSYELRHRAGNDASQQRKNEALKRLQVVESFRAS
RGRNKPEWMIVRIVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIEIKAP
EVILRNEKRMLQESVDSLFDNSRKSSAVKTDANRPLKSLSDSLKGKQGRFRQNLLGKRVD
YSARSVIVVGPELKMGECGIPKLMAAELYKPFIIRKLIERGIVKTVKSAKKIVDRKEPVI
WDILEHVMKGHPVLLNRAPTLHRLGIQAFQPKMIEGKAIQLHPLACTAFNADFDGDQMAV
HLPLSNEAILEAQMLMLQSHNILNPANGAPITVPAQDMVLGLYYITKLRAGAKGEGLTFY
GPEEALIAYNEGKVDIHAPVKVIVKDVDENGNIVDVMRETSVGRVIVNEIVPPEAGYINT
IISKKSLRDIISDVIKVCGVAKAADFLDGIKNLGYQMAFKGGLSFNLGDIIIPKEKETLV
QKGYDEVEQVVNNYNMGFITNNERYNQVIDIWTHVNSELSNILMKTISSDDQGFNSVYMM
LDSGARGSKEQIRQLSGMRGLMAKPQKAGAEGGQIIENPILSNFKEGLSVLEYFISTHGA
RKGLADTALKTADAGYLTRRLVDVSHDVIITEEDCGTLRGLVCTDLKNNDEVIATLYERI
LGRVSVHDIIHPTTGELLVAGGEEITEEVAKKIQESPIESVEIRSVLTCEAKKGVCAKCY
GRNLATSRMVQKGEAVGVIAAQSIGEPGTQLTLRTFHAGGTAANIAANASIVAKNNARLE
FEELRTVDIVDEMGESAKVVVGRLAEVRFVDVNTGIVLSTHNVPYGSTLYVSDGDLVEKG
KLIAKWDPFNAVIITEATGKIEFEGVIENVTYKVESDEATGLREIIIIESKDKTKVPTAH
ILTEDGDLIRTYNLPVGGHVIIENGQKVKAGEVIVKIPRAVGKAGDITGGLPRVTELFEA
RNPSNPAVVSEIDGEVTMGKIKRGNREIIVTSKTGEVKKYLVALSKQILVQENDYVRAGT
PLSDGATTPADILAIKGPTAVQEYIVNEVQDVYRLQGVKINDKHFEIIVRQMMRKVQIDE
PGDTRFLEQQVVDKLEFMEENDRIWGKKVVVDAGDSQNMQAGQIVTARKLRDENSMLKRR
DLKPVEVRDAVAATSTQILQGITRAALQTSSFMSAASFQETTKVLNEAAINGKIDKLEGM
KENVICGHLIPAGTGQREFEKLIVGSKEEYDRILANKKTVLDYNEVE
NT seq 4284 nt   +upstreamnt  +downstreamnt
atggcttttagaaaagaaaataagacgaaaagtaatttctcgaagatctcaattggtctg
gcttctccggaagaaatccttgagaattcgagtggtgaagttttgaagcctgaaaccatt
aattaccgtacgtacaaacccgaacgtgacggtttgttctgcgagcgcatttttggtcct
atcaaggattatgaatgtcattgcggtaaatacaagcgtatccgttataaaggtatcgtc
tgcgaccgttgtggtgtggaagttactgaaaagaaagtgcgccgtgaacgtatgggacat
atccagctggttgtgccggtggctcacatctggtatttccgttcgcttcctaataaaatc
ggttatttgctcggattgccgacaaagaaactggattcgattatatactacgaacgttat
gttgttattcagccgggtgtgaaagctgaagatggcgtagccgaatatgatttgctttct
gaagaagaatatctggatattctggatacgcttccgaaagacaatcagtatcttgaagat
aatgatccgaataaatttgttgcaaagatgggagccgaagctatctatgatttgctggct
cgtttggatctggatgctttgtcttacgaactgcgtcaccgcgccggaaacgatgcgtct
cagcaacgtaagaatgaagctttgaaacgtcttcaggtagtagaatcgttccgcgcatca
cgtggacgtaacaaaccggaatggatgatcgtacgtatcgtaccggttattccgcccgaa
cttcgtccgttggttccgctggatggtggccgttttgctacatctgacttgaacgacctt
tatcgtcgtgtgattatccgtaacaaccgtttgaaacgactgattgaaatcaaggctccg
gaagtaatcttgcgtaatgaaaaacgtatgcttcaggaatctgtcgattctttgtttgat
aactcacgtaagtcaagtgctgtgaagacagatgccaaccgtccgttgaagtcattgtct
gacagtttgaaaggtaaacagggacgtttccgtcagaacttgctgggtaaacgtgttgac
tactctgctcgttccgtaatcgtcgttggtccggaattgaagatgggtgaatgcggtatt
cctaaattgatggctgccgaattatacaagccgtttattattcgcaaactcatcgaacgt
ggtatcgttaagactgttaagtctgcaaagaaaatcgtagaccgcaaagagccggtgatt
tgggatatcttggaacatgtaatgaagggacacccggtactgttgaaccgtgctccgacc
ttgcaccgtttgggtattcaggctttccagcctaaaatgatcgaaggtaaagctatccag
ttgcacccgttggcatgtacggcattcaacgccgactttgacggtgaccagatggctgtt
cacttgcctttgagtaatgaagcaattcttgaagcacaaatgttgatgcttcaatcacat
aatatcttgaatccggcaaacggtgcgcctattactgtacctgcacaggatatggttctt
ggtttgtactatattactaagttgcgtgctggtgcaaaaggtgaaggcttgacattctac
ggaccggaagaagcgttgatcgcttacaatgaaggtaaggtggatattcatgctccggtg
aaggttatcgtgaaagacgttgatgaaaatggtaacattgtagacgtaatgcgcgaaact
tcagtaggacgtgtgattgtgaatgaaatcgttccacctgaagctggttatatcaataca
attatctctaagaaatctcttcgtgatattattagtgatgtaattaaggtctgtggtgtg
gctaaggctgccgacttcctggatggaatcaagaatttaggttatcagatggcgttcaag
ggtggtttgtcattcaacttgggtgatattatcattccgaaggaaaaagaaactttggta
caaaaaggttacgacgaagttgaacaagtcgtaaacaactataacatgggtttcattacc
aataacgaacgttacaatcaggtaattgatatttggacacatgtgaactccgagttgtct
aatatcctgatgaagactatttcttcggacgatcagggtttcaactctgtatatatgatg
cttgactctggtgcccgtggttcaaaagagcagattcgtcagttgtcaggtatgcgtggt
ttgatggcaaaaccgcagaaagcaggtgctgaaggtggtcagatcatcgagaacccgatt
ttgtcgaactttaaagaaggactttcggtgttggagtactttatctctacccatggtgct
cgtaaaggtttggcggataccgctttgaagactgccgatgctggttatttgactcgtcgt
ctggtggacgtatcacacgatgtgattattacagaagaagactgcggtacactccgcgga
ttggtttgtacggaccttaagaataatgatgaggttattgctactctgtacgaacgtatc
ttaggccgtgtttccgtacatgatattattcatcctaccacaggtgaattgcttgttgcc
ggtggtgaagaaatcacagaagaagtagccaagaagattcaggagtctccgatcgagagt
gttgaaatccgttcggtattgacttgtgaagctaagaagggtgtttgtgctaaatgctac
ggacgtaacctggcaacgagccgcatggttcagaagggtgaagctgtcggtgtaatcgct
gctcagtctattggtgagccgggtacacagttgacattgcgtacattccacgccggtggt
actgctgcaaatattgcagctaacgccagtatcgttgctaaaaataatgcacgtcttgaa
tttgaagagttgcgtacagtagatatcgttgacgagatgggtgaatctgcaaaagtagta
gtaggtcgtttggccgaagtacgttttgtggatgtgaataccggtatcgttctttctact
cataacgtaccttatggttcaacactgtatgtaagcgacggcgatttggtagaaaaaggc
aaactgattgctaagtgggacccgttcaatgctgttattatcacagaagcaaccggtaag
atcgaatttgagggcgtgattgaaaacgttacttataaggttgaatcggatgaagcaaca
ggtcttcgtgaaattattattattgaatccaaggataaaaccaaagttcctactgctcat
atcttaacagaggacggtgatttgatccgtacttataacttaccggtaggtggtcacgtt
atcatcgagaacggtcagaaggtaaaagccggtgaagtaatcgtgaagattccgcgtgcc
gtaggtaaggcgggtgatatcacgggtggtcttcctcgtgttactgaattgtttgaagct
cgtaacccgtcaaatccggctgtcgtttctgaaatcgacggtgaggtgacaatgggtaag
atcaaacgtggtaaccgtgaaatcatcgtaacttccaagacaggtgaggttaagaaatat
ctggttgcactgtctaagcagattctggtacaggaaaatgactatgtacgtgctggtact
ccgttgtctgacggtgctactactccggcagatatcttggcaatcaagggtcctacagct
gtacaggaatatatcgtgaatgaagttcaggatgtatatcgcttgcagggtgtgaagatt
aatgataagcactttgagattatcgttcgtcagatgatgcgcaaagtacaaattgatgaa
ccgggagatactcgcttcctcgaacagcaagtcgtagacaaactggaattcatggaagaa
aatgatcgtatctggggtaagaaagtcgtagtagatgctggtgattctcaaaatatgcaa
gctggacagattgtaactgcccgcaagttgcgtgatgagaatagtatgttgaaacgtcgt
gacttgaaaccggttgaggttcgtgacgctgttgctgctacctctactcagattcttcaa
ggtatcacgcgtgctgctttgcaaacatcaagctttatgtcggctgcttccttccaggaa
acaacgaaagtcttgaatgaagctgctattaacggtaagatcgataagcttgaaggtatg
aaggaaaatgtgatctgtggtcacttgattcctgccggtaccggacagcgcgagttcgaa
aagctcatcgttggatcaaaagaagagtatgaccgtatcttggctaacaagaaaacagta
cttgactacaatgaagtagaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (19)   

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