KEGG   Caldithrix abyssi: Cabys_2372
Entry
Cabys_2372        CDS       T04549                                 
Name
(GenBank) DNA polymerase-3 subunit alpha
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
caby  Caldithrix abyssi
Pathway
caby03030  DNA replication
caby03430  Mismatch repair
caby03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:caby00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Cabys_2372
   03430 Mismatch repair
    Cabys_2372
   03440 Homologous recombination
    Cabys_2372
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:caby03032]
    Cabys_2372
   03400 DNA repair and recombination proteins [BR:caby03400]
    Cabys_2372
Enzymes [BR:caby01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     Cabys_2372
DNA replication proteins [BR:caby03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     Cabys_2372
DNA repair and recombination proteins [BR:caby03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     Cabys_2372
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger PHP HHH_6 tRNA_anti-codon CheR_N
Other DBs
NCBI-ProteinID: APF19121
UniProt: H1XWS3
Position
2832608..2835802
AA seq 1064 aa
MRTMNTFVHLHTHSYYSLLDGVPSPEELVIAAKKAGFKALALTDHNALYGAVTFYQVARD
YGLKPIIGAELTMNDGFPLLFLVQNETGYRNLCQLISIGRLRGGHGKFKLTYNDLKPLTE
GLIVLSGGHKGKIYHLLRKRQIDQALLEVQRLKNLFAKNFYLEMQHFSNQDLLVNLRLRD
IAAETKTELVATNDVHFNSANDWYLRRILHAIDANGTLEQVTTAGTSQQYLKSAKEMQAL
FKAFPTALANTQKIARQCAFEFQLGKPIFPSVEIPQGESSFSYLWKQCFAGANERYQPLT
PQVIKRLEFELETIHQLGFAEYFLIVKDIVDFCRREHIPCVGRGSAADSLVAYVLGITQV
DPIRHNLYFERFLNPQRSDPPDIDLDICWKNRDRVLKYVYDRFGHKRTAMICTFNTFQNR
SALRDVAKAYGLPEDEIAKITKYLPHRHIDQIEEAVNTLPELKELRYNLTMYEEIMRIAR
RIADFPRHLSIHPGGVIIAPDQITRHVPLEVAGKEIVIAQYDMYSIEKLGLVKMDLLGVR
SLSIITDCLKSIKERHGNDLQQLKAQLLLKKSAELSPLDLRTIPEDDPEVTAFIRSGRTM
GCFQLESPAMRGLLRKMQIESVDDVITAVALIRPGASGSGMKEVYIKRRAGLEKTAYVHP
SLEEPLKETYGVIIYQEQVLRVAHAVAGLSLGQADILRRAMTKSRTKKEFLAMRSSFIQG
ALNKGLNQKQAETVWRFLAQFVGYGFNKAHSATYGTIAYQTAFLKYYFPAEYMCAVLNNQ
GGFYRRAAYVEEVRRLGIPLLPPDVTQSQAEFTCEGDGIRVGLSTVFELSAHTVKRIIEE
RQKAPFKDLFDFLRRTRAGEKETRHLIKVGALNALLPNEPKLLLMNEIYFKNKKHVSLSA
FLSEDVGLAPYNRFQKIVNELELLDFAVTDHPLALCEDQIARIKPVSSLELERHKNKCVT
FVGWLVTMRRVQTKNKTMMKFITLEDREGLVEAVLFEKAYKKYGHLFKGYGPYVVKGRVQ
SRLPGEANLLVEEVEALPLEKKKLETNSNSSIKYEQIMFPYFQN
NT seq 3195 nt   +upstreamnt  +downstreamnt
atgcgaaccatgaacacttttgtgcacctgcacacgcacagttattacagtttgttggac
ggcgtgccctcgcccgaggagctggtcatcgccgctaaaaaagccggttttaaagccctg
gccttaaccgaccacaacgccctgtacggcgcggttaccttttaccaggtcgccagagac
tacggcctgaaaccgatcattggcgcggagttgaccatgaacgacggctttcctctgctc
tttctggtgcaaaacgaaaccggttaccgcaatctgtgccagctcatttccatcggtcgt
ttgcgcggcgggcatggcaaattcaaattaacctacaacgaccttaaaccgctgactgag
ggcttgatcgtcctttccggcgggcacaagggaaaaatttaccacctgctccgcaaacgg
cagatcgatcaggccctgctggaggtgcagcgcttgaaaaatctgtttgctaaaaatttt
tacctggaaatgcagcatttttccaatcaggacctgctggtcaacctgcgcctgcgcgac
atcgccgctgaaactaaaaccgaactggtggccactaacgacgtacactttaattcagct
aacgactggtacctgcgccgtattctgcacgccatcgatgccaacggcacgctggagcag
gtgaccaccgccggcacctcgcaacagtatttgaaatcggctaaagaaatgcaggccctg
ttcaaggccttccccaccgccctggccaatacgcaaaaaatcgcccgacagtgcgccttt
gaatttcaactgggcaagcccatctttccttccgttgaaattccccaaggcgaaagcagt
ttttcctatttgtggaagcagtgctttgcgggcgccaacgaacgctaccagcccctgacg
ccgcaggtgatcaaacgtctggaatttgaactggaaaccatccatcaactgggctttgcc
gagtattttttaattgtgaaagacattgtggatttttgccggcgcgaacacattccctgt
gtgggacgcggatcggcagccgatagcctggtggcttacgtgttgggcattacccaggtg
gaccccatccgtcacaacctgtactttgaacgctttctcaatccccagcgcagcgatccg
ccggatatcgacttagacatctgctggaagaaccgcgaccgcgtgctcaaatatgtgtac
gaccgcttcggtcacaagcgcacggccatgatttgcacctttaacacctttcagaaccgt
tcggccctgcgcgatgtggccaaagcctacggcctgcccgaagacgagatcgccaaaatt
accaagtacctgccccaccggcacatcgatcagatcgaagaagcggtcaacaccctgccc
gagcttaaagaactgcgctacaacctgaccatgtacgaagagatcatgcgcattgcgcgg
cgcattgccgattttccgcgccatctgtccatccatcccggcggggtaatcatcgcgccg
gatcagatcacgcgccacgtgccgctggaggtcgccggtaaagagatcgtcattgcgcag
tacgacatgtattccattgaaaagctggggctggttaaaatggatttgctgggcgtgcgt
tccttaagcatcatcaccgattgcctgaaatcgattaaggaacggcacggcaacgacctg
cagcagcttaaggcgcaacttttgctcaaaaaaagcgccgagctttcaccgctggatttg
cgcaccattcccgaggacgatccggaggttaccgctttcattcgttccggccgcaccatg
ggctgttttcaactggagagtccggccatgcgcgggctgctgcgaaagatgcagatcgaa
agcgtggacgacgtaatcaccgcagtggcgctcattcgtcccggcgcctcgggcagcggc
atgaaagaggtgtacatcaaacggcgcgccggactggaaaaaaccgcctacgtgcatcct
tctctggaagaaccgttaaaagaaacctatggcgtgattatctaccaggaacaggtgctc
cgggtggcgcacgccgtggccgggttgtcgcttggtcaggccgatattttacggcgcgct
atgaccaagtcgcgcaccaaaaaagaatttttggccatgcgctcgtcctttattcagggc
gccctgaacaaaggactgaaccagaagcaggccgagacggtttggcgttttttagcgcaa
tttgtgggctacggctttaacaaggcacactcggccacttacggcaccatcgcctaccag
acggcttttctcaagtactatttcccggcagaatacatgtgcgccgtgctcaacaatcag
ggcggcttttaccgtcgggcagcctacgtggaagaggtgcggcgcctgggcattcccctg
ctgccgccggacgtgacgcagtcacaggccgaattcacctgcgagggcgacggcattcgc
gtcggcctttccaccgtattcgaactgagcgcgcacacggtgaagcgcatcatcgaagaa
cggcaaaaagcgccgtttaaggatttattcgactttttacgacgcacgcgcgccggcgaa
aaagaaacgcgtcatttgattaaggtcggcgccctgaatgccctgttgcctaacgagccc
aaactgcttttgatgaatgaaatttattttaagaacaaaaaacacgtttcgctcagcgcc
tttttaagcgaagacgtgggcctggcgccttacaatcgctttcagaaaattgtgaatgaa
ctggaactgctggactttgccgtaaccgaccacccgctcgccctttgcgaggatcagatt
gcccgaattaaaccggtgtcctccttggaactggaacggcacaaaaacaagtgcgtgacc
tttgtgggctggctggtgaccatgcgccgcgtgcaaaccaaaaacaaaaccatgatgaag
tttattaccctggaagaccgcgaaggattggtagaagccgtgttgtttgaaaaagcttac
aaaaagtacgggcacctgttcaaaggctacggaccttatgtggtaaaaggccgcgtacaa
tcacgattaccgggtgaagccaatttgctggtggaggaagtggaagctttgccattggaa
aagaaaaaattggaaacgaattcgaattcatcgattaaatatgagcaaatcatgttcccg
tattttcaaaattag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (61)   
   KEGG ORTHOLOGY (1)   
   RefGene (58)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (77)   

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