KEGG T00651: Caul

Caulobacter sp. K31: Caul_1769

Entry

Caul_1769 CDS T00651

Gene name

ligD

Definition

ATP-dependent DNA ligase

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

cak Caulobacter sp. K31

Pathway

cak03410	Base excision repair
cak03420	Nucleotide excision repair
cak03430	Mismatch repair
cak03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:cak03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:cak03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:cak03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:cak03450]

SSDB

Motif

Pfam:

LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

1868191..1870947

AA seq 918 aa
MAQGQLAEYRRKRDFQKTAEPSGDAAVASAPHARFVIQKHDATRLHYDFRLEVDGVLKSW
AVTKGPSLDPADKRLSVEVEDHPLDYGDFEGTIPKGQYGGGTVQLWDRGYWAPEPGFEDV
AKALKKGELKFVLEGERLHGSWVLVRMNWDRNAKDGPKRQVGGGRSNWLLIKHNDEAARP
GEGAAVLEEDASIASGRTMSDIAAGKGKGPSAFILKTKGKGDAVWTSRTKAEREALQKEA
QDTRAVEPTPSRLPGEGQDPDSSGESAGRHLGPGLRRGDGDKATKKAKAKTAVLPDFIEP
QLCKSLDRPPSGPGWAHEIKFDGYRVQLRVEGGRATLRTRKGLDWTEKFAAIARAAADLP
DSIIDGEVVALDAAGQPDFAGLQAALSDGKTGDLIFFAFDLLAEGGEDLRALPLHERKAR
LKAMMGEDEPRLRFVDHFETAGDAVLLSACKLELEGIISKRLDAPYRSGRSETWTKAKCR
AGHDVVIGGYTTTGSAFRSLIAGVMRDGKLTHVGRIGTGFGRDKVGKLLPRLKALETDTS
PFEGKGAPRKADDIHWVKPELVAEIEYAGFTGDGSIRQASFKGLREDIPASEVQAEVPAK
AETAELATPTPKAAPKSQTIATAKTDSIVLGVTISKPDKPLWPDVDGAPGTKIDLARYMA
AIGDWMLPHVKGRPASIIRVPDGIGGETFFQRHAMRGMSSLIDLVSVKGDKQPYIQFNRV
EALIAAAQIAAVEIHPWNCQPGDPEVAGRLVFDLDPAPGVTFEDVIAGAREIRDRLEELG
LVSFCKTTGGKGLHVVTPLSDKVEWAVAKTFAREVCARMAADAPDKYLITMSKKAREGRI
FLDYLRNDRTSTAVAPLSARARPGATVSMPLNWTQVKAGLDPTKYTIRTVPDLIAKSRAW
EDYFDAAKPLKAAIKRLG

NT seq 2757 nt +upstreamnt +downstreamnt
atggcccagggacaactcgccgaatatcgccgcaagcgcgatttccagaagaccgccgag
ccgagcggcgacgccgcggtcgcatccgcgccgcacgcccgcttcgtgatccagaagcac
gacgccacgcggctgcactacgactttcgcctggaggtcgacggggtgctgaagtcgtgg
gcggtgaccaaggggccgtccctggatcccgccgacaagcggctgtcggtggaggtcgag
gaccatccgctggactatggcgacttcgagggcacgatccccaagggccagtacggcggc
gggacggtgcagctgtgggaccgcggctattgggcgcccgaacccggcttcgaggatgtg
gccaaggcgctgaagaagggcgagctgaagttcgtgctggagggcgagcggctgcatggc
tcgtgggtgctggtgcggatgaactgggaccgcaacgccaaggatggccccaagcgacaa
gtagggggcgggcgctccaactggctgctgatcaagcacaatgacgaggccgcgcggccg
ggcgaaggggcggccgtgctggaggaggacgcctcgatcgcctcgggccggaccatgtcc
gacatcgccgccggcaagggcaagggaccgtcggcgttcatcctgaagaccaagggcaag
ggcgacgccgtctggacctcgcggaccaaggccgagcgcgaggcgctgcagaaggaggcg
caggacacgcgggcggtcgagcccaccccatcccgtcttcccggcgaaggccaggaccca
gattcatccggagagtcggcagggcgtcacctgggtcccggccttcgccggggagacgga
gacaaggcgaccaagaaagccaaggccaagaccgctgtcctgcccgacttcatcgaacct
caactctgcaagtctctggatcgcccgccgtccggacccggctgggcgcatgagattaag
ttcgacggctatcgcgtgcagttgcgcgtcgagggcggtcgggcgaccctgcgcacccgc
aagggtctggactggacagagaagttcgccgccatcgcgcgggccgccgcggacctgccc
gacagcattatagacggcgaggtcgtggccctggacgccgccggccagcccgacttcgcc
ggcctgcaggcggcgctgtcggacggcaagaccggcgacctgatcttcttcgctttcgac
ctgctggcggagggcggcgaggacctgcgcgccctgccgctgcacgaacgcaaggcgcgg
ctgaaggcgatgatgggcgaggacgagccgcgcctgcgtttcgtcgaccacttcgagacg
gccggggacgcggtgctgctgtcggcctgcaagctggaactggaaggcatcatctccaaa
cggctggacgccccataccgatcggggcgcagcgagacctggaccaaggccaagtgccgg
gccggccatgacgtggtgatcggtggctatacgacgaccggctcggcgttccgctcgctg
atcgccggcgtcatgcgcgacggaaagttgacccatgtgggccgaatcggcaccggcttt
ggccgcgacaaggtgggcaagctgctgccgaggctgaaggccttggagaccgacacctcg
ccgttcgaaggcaagggcgcgccgcgcaaggccgacgacatccactgggtgaagccggaa
ctggtggccgagatcgaatatgccggtttcacgggggacggctcgatccgccaggcctcg
ttcaagggcctgcgcgaggacattccagccagcgaggtccaggccgaggttccggccaag
gcggaaaccgccgagctggcgacgcccacccccaaggccgcgcccaagtcccagacgatc
gccaccgccaagaccgatagcatcgtgctgggcgtgacgatctccaagcccgacaagccg
ctgtggccggacgtcgacggcgcgccggggaccaagatcgacctggcccgctacatggcg
gcgatcggcgactggatgctgccgcacgtgaagggccggccggcctcgatcatccgggtt
cccgacggcatcggcggcgagaccttcttccaacgccacgccatgcgcgggatgtcgtcg
ctgatcgacctggtttcggtcaagggcgacaagcagccctacatccagttcaaccgggtc
gaggcgctgatcgccgccgcccagatcgccgccgtcgagatccatccctggaattgccag
ccgggcgatccggaggtggccggccgcctggtgttcgacctggatcccgcgccgggcgtc
accttcgaggacgtgatcgccggcgcgcgcgagatccgcgaccggctggaggaactgggc
ctggtcagtttctgcaagaccaccggcggcaagggcctgcacgtggtcacgcccttgtcc
gataaagtagagtgggctgtagcaaagaccttcgcccgcgaggtctgcgcccgcatggcc
gccgacgcgccggacaagtacctgatcaccatgagcaagaaggcgcgcgagggccgcatc
ttcctcgactacctgcgcaacgaccgcacctcgaccgccgtggcgccgctttcggcccgc
gccaggccgggggcgacggtgtcgatgccgctgaactggacccaggtaaaggcggggctg
gacccgacgaagtacaccatccgcaccgtcccggacctgatcgccaagagcagggcctgg
gaggactatttcgacgccgccaagccgctgaaggcggcgatcaaacggctggggtga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-CAK (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (17)   

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