KEGG T00651: Caul

Caulobacter sp. K31: Caul_4898

Entry

Caul_4898 CDS T00651

Definition

ATP-dependent DNA ligase

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

cak Caulobacter sp. K31

Pathway

cak03410	Base excision repair
cak03420	Nucleotide excision repair
cak03430	Mismatch repair
cak03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:cak03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:cak03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:cak03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:cak03450]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_C DNA_ligase_A_N

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

5291250..5292869

AA seq 539 aa
MRAFAHLLDRLSLTASRNAKLTLIKDFLRETPDPERGWVLAALTGALSFSAAKPAFIRKA
VEARMDAQLFAWSYDYVGDLAETVALVWPAKPGANREPDLSEVVEALRTASRTEVQRLIE
GWLDALDADGRWALLKLMTGGLRVGVSARLAKQACADFGGVEIGAVEEVWHAMTPPYGDL
FAWLEGRSEQPSPDAPGRFRPVMLAQAIDEVVDFAKLDPADYAAEWKWDGIRVQAVSERG
ERRLYTRTGDDISATFPDVLEALTFEGALDGELLVMRDGRVASFGDLQQRLNRKTVDAKQ
LANFPIGIRAYDLLLDGEADLRGLPFVERRQRLEAFIAQIPTGGAASPRIDLSPIQPFAT
WEALAALRAEPPAGDPTIAEGLMLKRWDSVYEPGRPKGPWFKWKRDPRLIDAVLMYAQRG
HGKRSSFYSDYTFGVWREDETGTRHLTPVGKAYFGFTDEELKQIDKFVRDHTVERFGPVR
SVRADWDFGLVFEVAFEGLQRSTRHKSGVAMRFPRINRIRWDKPSREADELNTLERMLD

NT seq 1620 nt +upstreamnt +downstreamnt
atgcgcgccttcgcccatcttctcgatcgactgtccctgacggcttcgcgcaacgccaag
ctcaccctgatcaaggacttcctgcgcgagacgcccgatcccgagcgcggctgggtgctg
gcggccctgaccggagccctgtcgttcagcgccgccaagccggccttcatccgcaaggcc
gtcgaggcgcgaatggacgcccagctgttcgcctggtcctacgactatgtcggggacctg
gccgaaaccgtcgccctggtctggccggccaagcccggcgccaatcgcgagccagacctg
tcggaggtggtcgaggccctgcgcaccgcgtcgcggaccgaggtccagcggctgatcgag
ggctggctggacgccctggacgccgacggccgctgggccttgctgaagctgatgacgggc
ggcctgcgggtcggcgtgtcggcgcgattggccaagcaggcctgcgctgacttcggcggg
gtggagatcggcgcggtcgaggaggtctggcacgccatgaccccgccctatggcgacctg
ttcgcctggctggagggacgctccgagcagccctcgcccgatgcgccggggcggttccgg
ccggtaatgctggcccaggcgatcgacgaggtcgtggacttcgccaagctcgatcccgcc
gactacgccgccgagtggaagtgggacggcatccgcgtccaggcggtcagcgaacgcggc
gagcggcggctctatacccgcaccggcgacgacatttcggcgacctttcccgacgtgctg
gaggccctgaccttcgaaggcgcgctcgacggcgagctcttggtgatgcgcgatgggcgg
gtcgcgagctttggcgacctgcagcagcggctgaaccgcaagacggtcgacgccaagcaa
ctggccaattttccgatcggtattcgcgcctatgatctgctgctcgacggcgaggccgac
ctgcgcggcctgccgttcgtcgagcggcgccagcgcctggaggccttcatcgcccaaatt
ccgactggaggggccgccagcccgcgcatcgacctgtcgccgatccagccgttcgcgacc
tgggaggcgctggcggccttgcgcgccgagccgccggccggtgatcccacgatcgccgaa
ggtctgatgctcaagcgctgggacagcgtctacgaaccgggccggcccaaggggccatgg
ttcaagtggaagcgcgatccacgcctgatcgacgccgtgctgatgtacgctcagcgcggc
cacggcaagcgatcgagcttctactccgactacaccttcggggtctggcgcgaggacgag
accgggacacgccacctgaccccggtcggcaaggcctatttcggcttcaccgacgaggag
ctgaagcagatcgacaaattcgtccgcgaccacaccgtcgaacggtttgggccggtgcgc
tccgtgcgggccgactgggatttcggcctggtgttcgaggtcgccttcgaggggctgcag
cgctcgacccgccacaagtccggcgtggccatgcgctttccgcgcatcaaccgcatccgc
tgggacaagccgtcgcgcgaggcggacgagctgaacacgctggagcggatgctggattga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-CAK (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (16)   

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