KEGG   Campylobacter fetus subsp. testudinum 03-427: CFT03427_1089
Entry
CFT03427_1089     CDS       T02899                                 
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
camp  Campylobacter fetus subsp. testudinum 03-427
Pathway
camp03030  DNA replication
camp03410  Base excision repair
camp03420  Nucleotide excision repair
camp03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:camp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CFT03427_1089 (ligA)
   03410 Base excision repair
    CFT03427_1089 (ligA)
   03420 Nucleotide excision repair
    CFT03427_1089 (ligA)
   03430 Mismatch repair
    CFT03427_1089 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:camp03032]
    CFT03427_1089 (ligA)
   03400 DNA repair and recombination proteins [BR:camp03400]
    CFT03427_1089 (ligA)
Enzymes [BR:camp01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     CFT03427_1089 (ligA)
DNA replication proteins [BR:camp03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     CFT03427_1089 (ligA)
DNA repair and recombination proteins [BR:camp03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     CFT03427_1089 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     CFT03427_1089 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     CFT03427_1089 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      CFT03427_1089 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB BRCT HHH_2 PTCB-BRCT HHH_5 BRCT_2 DNA_ligase_ZBD PDZ_1
Other DBs
NCBI-ProteinID: AGZ81948
Position
complement(1110317..1112254)
AA seq 645 aa
MDKNDYLKAVDRLNLWAKAYYTDDSPIASDDEYDKLYNAVVQFEKENPDLKLSYSPTNRI
GGEVLDEFKKISHIAKMWSMEDIFSDSELVAWILRGDKTDCEFFAEPKFDGASLNLLYEN
GNLISAATRGDGSVGEDVTNNAKVISSVPLQIDYKDKIEIRGEVVISKDDFELINSERSK
NSEPPLANPRNAAAGSLRQLDNSIVKQRKLKFYPWGVGENSLKFNKHSQIMDFVRSLGFL
RDDFCKVIKGIDELKIAYKELLSARELKPILMDGMVIRVNDLSKANQLGYTVKFPKFMVA
YKFPATEKTAKLIDILLQVGRTGVVTPVGLLDGVLIDGAFVKNVTLHNFDEIDRLNLMKN
DFVTVIRSGDVIPKITGVFKDRRDGTQSEIIRPKICPECGNELLDEGVFIKCQNLTCKAR
VVSSIIYFASKKCMNIDGLGDAIVELLYQKNIIKDIADIYRLDELSFIGLEGFKTKKISN
LLLAIDNSKTPNLDKFITSLGIEHIGEVAAKKIAKNYGDKWLELTIEELLSLDGFGEAMA
LSYLEFMRVNLEKIKELLEFITPKIQNLELKTNIFSGKTVVITGTLSRSRDEFKAQLESY
GATISNSVSKKTDFVLYGNEAGSKLEKANKLGVRTIDESEYESLK
NT seq 1938 nt   +upstreamnt  +downstreamnt
atggataaaaatgattatttaaaagcggtcgataggctgaatttatgggcaaaggcttat
tataccgatgattctccgatagcatcagatgatgagtatgacaagctttataacgctgta
gttcagtttgaaaaagaaaatccggatttaaaactctcttactctcctacaaatagaatc
ggcggagaagttttagatgagtttaaaaagatatctcatatcgcaaaaatgtggtctatg
gaagatatatttagcgatagtgagcttgttgcttggattttaagaggagataaaacagat
tgcgagttttttgctgaacctaaatttgatggcgctagtttaaatttgctttatgaaaac
ggaaatcttataagtgctgctacaagaggcgatggaagcgtcggagaagatgttacgaac
aacgcaaaagttataagctcagtgccgttgcaaatagactataaagacaaaatagaaata
agaggcgaagtcgtaatatcaaaagatgattttgaactgataaatagtgagcgtagcaaa
aactcagaaccgcctttagcaaatccaagaaacgcagcagcaggaagtcttaggcagctt
gataatagtatagttaagcaaagaaaacttaagttttatccgtggggagttggagagaac
tctttgaaatttaataagcattcgcagattatggattttgtgaggagtcttggtttttta
cgtgatgatttttgtaaagttatcaaaggtatcgatgagttaaaaattgcttataaagag
cttttaagcgcaagagagcttaagcctattttgatggatggaatggtgatacgagtaaat
gatctatcaaaagctaatcagcttggttatactgttaaatttccaaaatttatggtagct
tataaatttcctgctactgaaaagactgcaaaactgatagatatcttgctacaagtagga
agaacaggagtcgtaactccagtagggttgcttgatggagttttgatagatggtgcattt
gtaaaaaatgttacgcttcataatttcgatgagatagatagactaaatttgatgaaaaac
gactttgtcaccgtgataagaagtggagatgttatacctaagatcactggagtatttaaa
gatagaagagacggaactcaaagcgagataatccgccccaaaatttgcccagaatgcgga
aatgaacttttggatgaaggcgtttttataaagtgtcaaaatctaacttgtaaagctaga
gttgtgagttctattatctattttgcatctaaaaaatgtatgaatatagatggtcttggc
gatgctatagtagagcttttatatcaaaaaaatattattaaagatatcgctgatatttat
aggcttgatgagcttagttttataggtcttgagggatttaaaactaaaaaaatctcaaat
ttgctattagctatagataactctaaaactccaaatttagataaatttataacttctttg
ggtatcgagcatatcggtgaagttgcggctaaaaaaatagcaaagaattacggagataag
tggcttgagctaactattgaagagcttttatctttagatggatttggtgaagctatggct
cttagttatcttgagtttatgagagtaaatttagaaaagataaaagaacttttagagttc
atcactccaaaaatacaaaatttagagctaaaaacaaatatattttcaggaaaaactgta
gtcataacaggcactctttcgcgctccagagatgagttcaaagctcagttagaaagctat
ggcgctacaatatctaactccgtgtctaaaaaaacggattttgtattatatggaaatgaa
gctggaagtaagctagaaaaagcaaataaattaggcgtaagaacgatagatgagagtgag
tatgaaagtttaaaatga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (28)   

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