KEGG   Capsicum annuum (peppers): 107847326
Entry
107847326         CDS       T04646                                 
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 isoform X4
  KO
K12818  ATP-dependent RNA helicase DHX8/PRP22 [EC:5.6.2.6]
Organism
cann  Capsicum annuum (peppers)
Pathway
cann03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cann00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107847326
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cann03041]
    107847326
Enzymes [BR:cann01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     107847326
Spliceosome [BR:cann03041]
 Complex C
  Other components
   Step II factors
    107847326
SSDB
Motif
Pfam: Helicase_C HA2_N HA2_C DEAD AAA_22 ABC_tran AAA_19 ATPase_2 nSTAND3 SLFN-g3_helicase AAA_30 T2SSE AAA_29 AAA_16 Helicase_RecD FtsK_SpoIIIE nSTAND1 AAA_23
Other DBs
NCBI-GeneID: 107847326
NCBI-ProteinID: XP_016547002
Position
Unknown
AA seq 617 aa
MGDLPIVRFEEKIAETVEKNPVVVVIGETGSGKSTQLPQILYRRGYAKSGIIAVTQPRRV
AAVSVSRRVAQEQNVRIGEEVGYAIRFEDRTSEKTRIKYLTDGVLLRESLFDPELNQYSV
IILDEAHERSLNTDILLGLMKRLIKWRYSSLKVLITSATLDGGKVSRFFSDCPVLTVPGE
LFPVEIVHISERPKNYVEASVKKAIDIHVREPEGDILIFLTGQDDIEKLVLKLEEKVQSL
EEGSCMDALILPLHGSLPPEMQVRVFSSPPPNCRRFIVSTNIAETSLTVDGVVYVIDSGY
VKQRQYNPSAGMYSLEVVQISKVQAKQRAGRAGRTRPGKCYRLYPSMVYHDDFLDATVPE
IQRSSLAGTVLYLKSLDLADMDILKFDFLDSPSIESLEVALKQLYLVDAIDKNGSITSLG
RKMAELPLEPSLSRTLLEANELDCLSQALTVVSMLSSETTLLPVPSKSSEKKRTHTPSKL
PDGFGLGDHIQLLQIYEQWYQIDYNINWCKENNLQVCGMVFVRDVRKQLSQIMQKISKGS
LDVQTSNKRRDGQQEYKNLRKALCIGYANQLAERMIRHNGYRPLGFKSELVQDKVSGRMI
GNARESEGLYFLEGRET
NT seq 1854 nt   +upstreamnt  +downstreamnt
atgggggatttacctatagttcgatttgaggagaaaatcgcagaaacagtggagaaaaac
cctgtagtggtagttattggtgagactggttctggtaaaagtacacaacttccacaaata
ctttatcgaaggggttatgctaaatctgggatcatcgctgttactcagcctcgccgtgtt
gctgctgtttctgtttctagacgagttgcacaggagcaaaatgttcgaattggagaggaa
gtcggttatgccataagatttgaagatagaacttcagaaaaaacacgtatcaaatatctt
acagatggagtactccttcgcgagagtctttttgatccggagctgaatcagtattccgtc
atcatattggatgaagcacatgagaggagtttgaacacggatatattgctaggtctaatg
aaaagattaatcaaatggcgttactcaagcttgaaagttttgatcacatcagcaactctt
gatggtggaaaggtatctaggttcttctctgactgccccgtccttactgtaccaggagag
ttatttcctgtggaaatagtacacatctcggagcgtcctaaaaactatgtcgaggcttct
gtgaaaaaagctattgatattcatgtacgggagccagaaggggacattttaatattcttg
acagggcaggatgacatagagaagttggtactgaagttggaggagaaagttcaaagttta
gaagaaggttcctgtatggatgccctaatccttcctcttcatggatccttgccacctgag
atgcaggtgcgtgttttcagttctccacctccaaattgcaggaggtttattgtttctaca
aatattgctgaaacttccttgactgttgacggtgtcgtgtatgttattgactcggggtat
gtgaagcaacgacaatataacccatccgctggcatgtactcgttggaggttgttcagatt
agcaaggtgcaggcaaagcagcgtgcaggacgtgctggaagaacacgtcctggaaagtgt
tatcgtttatatccctctatggtttaccatgatgactttttggatgcaacggttcctgaa
atacaaaggtcttcactggctggaactgtgctttatttgaagtcgttagatcttgctgat
atggatattctcaaatttgattttctagactctccttccattgagtctttagaggttgcc
ttgaagcaattatatttagttgacgcaattgataaaaatggttcaatcacaagtcttgga
cgaaagatggctgagcttccactggagccttctctttcaaggaccttattagaggcaaat
gagttggattgcctgtcccaagcattgactgttgtttccatgttgtcttctgagaccaca
ttgcttcctgtcccaagtaagagctctgagaagaagaggacgcacactccctcgaaactt
cctgatggttttggcttgggtgatcacatccagctactccaaatttatgagcaatggtac
cagattgactacaacataaactggtgtaaagagaacaacttacaggtctgcgggatggtg
tttgtgagagatgttaggaaacagttatctcaaataatgcaaaaaatctctaaaggctca
ttagatgtccaaacaagcaataagcggagagatggccaacaggagtacaaaaatttgagg
aaagcactgtgcattggctatgcaaatcagcttgctgaacgaatgattcgacataacggg
taccggcctcttggtttcaagtctgaactcgtacaggacaaggtctcggggaggatgatt
ggcaatgctagagagtctgaaggtctctattttcttgaagggagagaaacatag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (5)   
   RefSeq(pep) (5)   
DNA sequence (9)   
   RefSeq(nuc) (5)   
   GenBank (2)   
   EMBL (2)   
Protein domain (18)   
   Pfam (18)   
All databases (41)   

Download RDF
DBGET integrated database retrieval system