KEGG   Capsicum annuum (peppers): 107865808
Entry
107865808         CDS       T04646                                 
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
cann  Capsicum annuum (peppers)
Pathway
cann03030  DNA replication
cann03410  Base excision repair
cann03420  Nucleotide excision repair
cann03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cann00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    107865808
   03410 Base excision repair
    107865808
   03420 Nucleotide excision repair
    107865808
   03430 Mismatch repair
    107865808
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cann03032]
    107865808
   03036 Chromosome and associated proteins [BR:cann03036]
    107865808
   03400 DNA repair and recombination proteins [BR:cann03400]
    107865808
DNA replication proteins [BR:cann03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    107865808
  DNA Replication Termination Factors
   ELG1-RFC complex
    107865808
Chromosome and associated proteins [BR:cann03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    107865808
DNA repair and recombination proteins [BR:cann03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     107865808
  Check point factors
   HRAD17(Rad24)-RFC complex
    107865808
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 AAA_14 AAA_22 Mg_chelatase Rad17 AAA_16 Viral_helicase1 RuvB_N AAA_5 AAA_24 AAA_11 nSTAND3 AAA_19 AAA_25 AAA_28 bpMoxR AAA_18 MeaB AAA_30 IstB_IS21 AAA_3 AAA_assoc_2 AAA_7 ABC_tran NTPase_1 RNA_helicase KTI12 SRP54 DNA_pol3_gamma3 DO-GTPase1 SLFN-g3_helicase
Other DBs
NCBI-GeneID: 107865808
NCBI-ProteinID: XP_016567486
UniProt: A0A1U8G823
Position
1:5811341..5817022
AA seq 332 aa
MASSSSSSSTGPEIPWVEKFRPNKVSDIVGNEDAVARLQVIARDGNMPNLILAGPPGTGK
TTSILALAHELLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIIILDE
ADSMTSGAQQALRRTMEIYSNSTRFALACNTSSKIIEPIQSRCALVRFARLSDQEILGRL
MAVVAAEKVAYVPEGLEAIIFTADGDMRQGLNNLQATHSGFGFVNQENVFKVCDQPHPLH
VKNMVRNVLEGKFDDACAGLKALYDLGYSPTDIITTLFRIIKNYDMAEYVKLEFLKETGF
AHMRICDGVGSYLQMCGLLAKLSLVRETAKAA
NT seq 999 nt   +upstreamnt  +downstreamnt
atggcttcttcttcttcttcatcatcaactggtccagaaatcccttgggttgagaagttc
cgaccgaacaaagtatccgacatcgttggcaacgaggatgctgtcgctaggctacaagtt
attgctcgtgatggaaatatgcccaatcttattttagccggtcctccgggtactggcaaa
accactagtatattggctcttgctcatgagcttttgggaccaaactataaggaggctgtc
ttggagctaaatgcgtcagatgatagaggcatagatgttgtcagaaacaaaatcaagatg
tttgctcagaagaaagttactcttccccccgggcgccacaaaataattattttggacgag
gctgacagcatgacatctggagctcagcaagcactgaggaggacaatggaaatatattcg
aactccactcgctttgcccttgcctgtaacacttcttctaagattatcgagcctattcaa
agcagatgtgccctggtccggtttgctagattatccgaccaagagatccttggacgcctt
atggctgtagttgcggcagaaaaggttgcatatgtacccgaaggtcttgaagctattata
tttaccgctgatggagatatgagacagggcttaaataacttacaagcaacacacagtgga
tttggttttgtcaaccaagaaaatgttttcaaggtttgtgaccaacctcatccgctgcat
gtgaagaatatggtgcggaatgtacttgaagggaaatttgatgatgcatgtgccggttta
aaggcactgtatgacctgggctattcccccactgacattatcacgacccttttccgaatt
ataaagaactatgatatggcagaatatgtaaagctggagttcttgaaggaaactggtttt
gcccacatgaggatctgcgatggggtcggttcatatctccagatgtgtggtctgctggct
aaactatcattggttcgagagacagctaaggctgcgtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (33)   
   Pfam (33)   
All databases (53)   

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