KEGG   Clostridium argentinense: RSJ17_03605
Entry
RSJ17_03605       CDS       T05123                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
carg  Clostridium argentinense
Pathway
carg03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:carg00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    RSJ17_03605
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:carg03021]
    RSJ17_03605
   03400 DNA repair and recombination proteins [BR:carg03400]
    RSJ17_03605
Enzymes [BR:carg01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     RSJ17_03605
Transcription machinery [BR:carg03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     RSJ17_03605
DNA repair and recombination proteins [BR:carg03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      RSJ17_03605
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid Apocytochr_F_C
Other DBs
NCBI-ProteinID: ARC83670
Position
639152..642685
AA seq 1177 aa
MFELNNFDAIQIGLASPEQIREWSRGEVKKPETINYRTLKPERDGLFCERIFGPMKDWEC
HCGKYKRVRYKGIVCDRCGVEVTKTKVRRERMGHIELAAPVSHIWYFKGIPSRMGLILDM
SPRSLEKVLYFASYVVLDPKDTGLDKKQILTEKDYREAIDKYGYDGFVAGMGAESIKVLL
QDIDLDELATELKEDLKTSSGQKRVRSIRRLDVVESFRKSKNKPEWMIIDVIPVIPPDLR
PMVQLDGGRFATSDLNDLYRRVINRNNRLKKLLDLGAPDIIVRNEKRMLQEAVDALIDNG
RRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKMYQCGLPK
EMALELFKPFVMKKLVETGVAHNIKSAKRMVERVMPQVWDVLEEVISDHPVLLNRAPTLH
RLGIQAFQPILVEGRAIKLHPLVCTAYNADFDGDQMAVHVPLSVEAQAEARFLMLAAHNI
LKPSDGKPVCVPTQDMVLGSYYLTLDKDGAKGEGRMFSSPNEVYMAYQVKDIDIHAKIKV
KMSKIKDGKLITGIIDTTPGKLIFNESIPQNLGFIDRSKPENEFKLEIDFLASKKNLGKI
IDRCYLKYGATETSKMLDNIKAKGYHFSSIGAITVATSDMEVPAAKETLLAETDAAVDKI
DKMYRRGFISEDERYERVIDKWTKTTEDIANALMDSLDKFNPIAMMADSGARGSKSQIKQ
LAGMRGLMANPSGKIIELPIRASFREGLDVLEYFISTHGARKGNADTALKTADSGYLTRR
LVDVSQDVIVRHEDCGSTEGFEVSEIKEGSEVIEPLSERLTGRYSAEDIINPKTGEVIVP
RDTYMDIHLAEEVESTGIKKVKIRSVFTCKSKIGVCSKCYGMNMATAQKINIGESVGIIA
AQSIGEPGTQLTMRTFHTGGVAGADITQGLPRVEELFEARKPKGLAIVSDVAGAARIEET
KKKRTVVITTNEGEEFSYDIPFGSRIKVLNGDTIGAGDEITEGSVNPHDIIRIKGVNGVK
NYLLSEVQKVYRLQGVDINDKHLEVVIRQMTRKVKIEESGDTDLLPGTMIDIFDFEEENE
RILAEGGMPSEGKITLLGITKAALATDSFLSAASFQETTRVLTDAAIKGKIDNLVGLKEN
VIIGKLIPAGTGMTRYRTIKISTEKENEEILTEDLQA
NT seq 3534 nt   +upstreamnt  +downstreamnt
ttgtttgaattaaataattttgatgcaatacaaatagggctagcttctccagaacagatc
agagagtggtctagaggagaggtaaaaaaacctgaaacaataaactatagaactttaaaa
ccagagagagatgggttattctgcgaaagaatatttggacctatgaaagactgggaatgt
cattgcggaaaatacaagagagttagatataaaggaatcgtttgtgacagatgtggtgtt
gaagttactaaaacaaaagtaagacgtgaaagaatggggcacatagaacttgctgctcct
gtatcacacatatggtattttaaaggaataccatcaagaatgggattaattcttgatatg
tcaccacgatctttagaaaaagttttatattttgcgtcttatgtagttctagatccaaag
gatacaggattagataaaaagcagatattaactgagaaggactatagagaagctatagat
aagtatggttatgatggatttgttgctggaatgggagcagaatcaatcaaagttttactt
caagatatagatcttgatgagttagctactgaattaaaagaagatttaaagacaagtagc
ggacaaaaaagagtgagaagtataagaagattagatgtagttgaatcctttagaaagtca
aaaaataaacctgaatggatgattattgatgttataccagtaataccaccagatttaaga
ccaatggttcaactagacggaggtagatttgctacatctgatttaaatgacctttataga
agagttataaacagaaataacagattaaagaaactgttagacttaggtgctccagatatc
attgttagaaatgagaagaggatgcttcaagaagctgttgatgctcttatagataatggt
agaagaggaagaccggttacaggtccaggaaatagaccgcttaaatcattatcagatatg
cttaaaggtaagcaaggaagatttagacagaaccttcttggaaaacgtgttgactactca
ggacgttccgttatagttgttggtccagaattgaaaatgtatcaatgtggacttccaaaa
gaaatggctcttgaattattcaaaccatttgttatgaagaaattagttgagactggagtt
gcgcataacataaagagtgcaaagagaatggttgaaagagtaatgcctcaagtatgggat
gtattagaagaagttatatctgatcatccagtattactaaaccgtgcccctactttgcat
agattaggtattcaagccttccaaccaattttagttgaaggaagagctataaagttacat
ccacttgtatgtacagcatacaacgctgactttgacggagaccaaatggcggtacacgta
ccactatcagttgaagcacaggcagaagctagatttttaatgttagcagctcataatata
ttaaaaccatctgatggaaaacctgtttgtgtacctacacaggacatggttttaggctca
tattatttaactctagataaagatggagctaagggtgagggaagaatgttctcttcacca
aacgaagtttatatggcatatcaagttaaagatattgatatacatgcaaaaattaaagtt
aaaatgagtaagattaaagatggtaagctaatcactggaatcattgacactactccaggt
aagctgatatttaatgaatctattccgcaaaatttaggatttattgatagaagtaaacca
gaaaatgagtttaagcttgaaattgatttcttagcaagtaagaagaatttaggtaagatt
atagatagatgttatctaaaatatggtgctactgagacatcaaaaatgttagataatata
aaggcaaaaggatatcacttttcatcaataggagctataactgttgctacttcagatatg
gaagttccagcagctaaggagaccttactagctgagacagatgctgctgttgataagata
gataaaatgtacagaagaggatttatatctgaggatgaaagatatgaaagagttatagat
aagtggactaagactactgaagatatagctaatgcccttatggatagtttagataaattt
aacccaatagcaatgatggctgattcaggagccagaggttctaagagtcagattaaacag
cttgctggtatgagagggcttatggctaacccatctggtaaaattatagagttaccaatt
agagcatcattcagagaaggtcttgatgtattagaatatttcatatctactcacggagct
agaaaaggtaacgccgatacagcacttaaaactgcagattcagggtatctaacaagaaga
cttgttgacgtaagccaagatgttattgtaagacatgaggactgtggttctacagaagga
tttgaagtaagtgaaatcaaagaaggaagcgaagtaatcgaacctttaagtgaaagactt
actggaagatatagtgcagaagatataattaatccaaaaacaggagaagttattgtccca
agagatacttacatggatatacaccttgcagaagaagttgaaagtacaggaattaaaaaa
gttaaaataagatctgtatttacatgtaaatctaagataggtgtttgttctaaatgttat
ggtatgaacatggctactgctcaaaaaattaacattggagaatctgttggtattatagct
gcacaatctataggtgaaccaggcacacagcttacaatgagaactttccacacaggagga
gttgctggagcggatattactcaaggtcttccaagggttgaagagttatttgaagctaga
aaacctaaaggattagcaattgtaagtgatgttgcaggtgcagcgagaattgaagaaact
aagaaaaagagaacagttgttataactacaaatgaaggggaagaatttagctacgatatc
ccattcggctcaagaatcaaagttttaaatggagacacaattggagctggagatgaaatc
actgaaggttcagttaacccacatgatatcatcagaattaagggagtaaatggagttaaa
aactatcttctttcagaagttcaaaaagtttatagacttcaaggtgttgatatcaatgat
aaacacttggaagttgttataagacaaatgactagaaaagttaaaatagaagagtcagga
gatactgatttattaccaggaacaatgatagatatatttgactttgaggaagaaaatgaa
agaattcttgctgaaggtggaatgccatcagaaggtaaaataacattgcttggaataaca
aaagcagcacttgctactgattcatttttatcagcggcttcattccaagaaactacaaga
gttcttactgatgcggctatcaagggcaaaattgataatctagtgggattaaaggaaaat
gtaattattggtaaattaatcccagcaggaacagggatgactcgctatagaacaattaag
atttctacagaaaaagaaaatgaagaaatcttaactgaggatttgcaagcatag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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