KEGG   Serpentinimonas raichei: SRAA_1504
Entry
SRAA_1504         CDS       T03614                                 
Name
(GenBank) ribonuclease G and E
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
cbaa  Serpentinimonas raichei
Pathway
cbaa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cbaa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SRAA_1504
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cbaa03019]
    SRAA_1504
   03009 Ribosome biogenesis [BR:cbaa03009]
    SRAA_1504
Enzymes [BR:cbaa01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     SRAA_1504
Messenger RNA biogenesis [BR:cbaa03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     SRAA_1504
Ribosome biogenesis [BR:cbaa03009]
 Prokaryotic type
  rRNA processing factors
   SRAA_1504
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1 Anti-TRAP
Other DBs
NCBI-ProteinID: BAO81358
UniProt: A0A060NPD9
Position
1622800..1625979
AA seq 1059 aa
MKRMLINATQSEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDY
GEDRQGFLPFKEIGRQYFQGNASPAQARIQDVIKEGQELLVQIEKEERGNKGAALTTFVS
LAGRYVVLMPNNPRGGGVSRRIEGDERAELKAVLDQLDYPGGMSIIARTAGIGREAGELQ
WDLNYLLKLWNAIDGAAKAGKGAFLIYQESSLVIRAIRDYFNSQIGEILIDTDDIYEQAH
QFMSHVMPEHGHRVKRYRDDAPLFSRFQMEHQIETAYSRTVQLPSGGAIVIDQTEALVAV
DVNSARSIKGGDIEETALRTNLEAADEVARQARLRDLGGLLVIDFIDMEESRNRRDVENR
LRDALRQDRARVQFSAISKFGLLEMSRQRLRPTLAEGASIPCPRCGGSGHIRDTESSALQ
ILRVIQEESLKDGTAAVFVQVPVEVASFLLNEKRTEITKIELRQRINVLLVPNKSLDTPH
YKLERLKHDDPRLDKLDASYRLAEEIDDVATVTRRSHERANKQEPLIKGVLPDGPAPQAA
AKASPAEAPAAPAAPVAAAAAGATHAATPRTGGAAQAPTSAAAPSGFMAWFKRLLGLEPS
AAPAADSVVPSTPASPIPATASARAELGRGGRGGAGRGRNGERGERGERGDRGPRPEGAS
EAAGRGGERGSRGERSDRGERPARPEGRIEGRADSATEGREPRAERGNARTEAGERTERG
EARRPARPDREGRSEREGREPREPREGRREGSEAQASSAPANLDGDMSPASTGTGSETPR
RERGGRGRGGEGRRGATIPVNGVDSVASSAEEASAERPLTDAASTDASGTPQLPSEREAE
DTGSRRRSRDRYGRDRRDRTAGTEASDSADNTDVSDDSPANAPAATPAAAAVVATAAEAS
QEVEAQPRSYFSRASSQAAADAPAAADAPAAPSSAAAPAPSPRAVTDTDSAALPAAAPVP
APAPAVAPTSTATVATEQQPSAQASTPYVLPLTELEALASQVGLQWVQSDAARVEQARAA
SAAQAPAPHAPRQPKPVQMPGDGPLVLVETRRDLRQLNF
NT seq 3180 nt   +upstreamnt  +downstreamnt
atgaaacgcatgctgatcaacgccacccagtccgaagaacggcggttggccatcgtagac
gggcaaaaactgctcgactacgaaatcgaaatcgaagggcgcgagcagcgcaaaggcaat
atctacaaggccgtggtgacgcgcgtcgagccttcgctggaagcctgcttcgtggattac
ggcgaagaccgccaaggctttttgccgttcaaggaaatcgggcgccaatacttccaaggc
aatgcctcgcccgcccaggcgcgcatccaggacgtgatcaaagaaggccaggaactgctg
gttcaaatcgaaaaagaagagcgcggcaacaaaggcgcggccctcaccaccttcgtcagc
ttggccgggcgctacgtggtgctgatgcccaacaacccgcgcggcggtggcgtgagccgg
cgcatcgaaggcgacgaacgggccgaactcaaagcggtgctggaccagctcgactacccg
ggtggcatgagcatcatcgcgcgcaccgccggcatagggcgcgaagcgggtgaattgcaa
tgggacttgaactacctgctcaagctctggaacgccatcgacggcgccgccaaagccggc
aagggcgcgttcctgatttaccaggaatcgagcctggtgatccgcgccatccgcgactat
ttcaacagccagatcggtgaaatcctgatcgacaccgacgacatctacgagcaagcgcac
cagttcatgagccacgtgatgcccgaacatgggcatcgggtgaagcgctaccgcgacgac
gcgccgctgttttcgcgcttccagatggagcaccagatcgaaaccgcctacagccgcacg
gtgcaactgcccagcggtggcgcgatcgtgatcgaccagaccgaagcgctggtggcggtg
gacgtgaactcggcgcgctccatcaagggcggcgacatcgaggaaaccgcgttgcgcacc
aacctcgaggccgccgacgaagtggcgcgccaagcccggctgcgcgatttgggcggcctg
ctggtgatcgacttcatcgacatggaagaatcgcgcaaccggcgcgatgtagaaaaccgc
ctgcgcgatgcgctgcgccaagaccgcgcccgggtgcagttcagcgccatcagcaaattt
ggcctgctcgaaatgagccgccagcgcctgcgccccaccttggccgaaggggcctccatc
ccctgcccgcgctgcggcggctcgggccacatccgcgacaccgagagctcggcgctgcaa
attttgcgcgtgatccaagaagaatcgctcaaagacggcaccgccgccgtgttcgtgcag
gtgccggttgaagtggcaagctttttgctcaacgaaaaacgcaccgagatcaccaagatc
gagctgcgccagcgcatcaacgtgctgctggtgcccaacaaatcgctcgacaccccacac
tacaagctcgaacgcctcaagcacgacgacccgcgcctcgacaagctcgacgccagctac
cggctggccgaagaaatcgacgacgtggccaccgtgacccggcgcagccacgagcgcgcc
aacaagcaagagccgctgatcaagggcgtgctgcccgacggcccggcgccgcaggctgcg
gccaaagccagcccggccgaggccccggctgcgccagcggctcctgtggctgccgccgca
gcgggcgcaacccatgccgccacgccgcgcactggcggcgccgcccaagcgcccacttct
gctgcagcgccgagcggtttcatggcctggttcaagcgcttgctgggcttggagccgagc
gccgcgccggctgcggacagcgtggtgccatccaccccggccagccccatacccgccacc
gcatctgcccgggccgagcttgggcgcggcggacgtgggggcgcaggccgcggccgcaat
ggcgaacgcggcgaacgcggcgagcgcggtgatcgtggtccgcggcctgaaggcgctagc
gaggccgcaggccgtggtggcgagcgcggcagccgcggtgagcgcagcgaccggggcgag
cgtcctgcccgccctgaaggccgcattgaagggcgtgccgattccgccaccgagggccgc
gagccccgcgccgagcgtggcaacgcccgcaccgaagccggcgagcgcaccgaacgcggc
gaggcacgccgccctgcgcgcccggatcgcgaaggccgcagcgaacgcgaaggccgtgag
ccacgcgaaccccgcgaaggccggcgtgagggcagcgaggcccaagccagcagcgcccct
gcgaacctagacggtgacatgagccctgccagcacaggcaccggcagcgagaccccacgg
cgtgagcgcggtgggcgtggccgtggtggcgaaggccgacgcggtgccaccatcccagtc
aacggggtcgattctgttgcatccagtgccgaggaggccagcgccgagcgccccttgacc
gacgctgcgtcaaccgatgcgtcgggcaccccgcagctgcccagcgagcgcgaggccgaa
gacaccggcagccgccgccgcagccgcgaccgctacgggcgcgaccggcgcgatcgcacc
gccggcaccgaagccagcgacagcgccgacaacaccgatgtgagcgatgacagccctgcc
aatgctcctgctgccacacctgctgccgcagcggttgttgcaactgccgccgaggccagc
caagaagtcgaggcgcaaccgcgctcctacttcagccgcgccagcagccaggctgcagcc
gatgcgcccgcagcagccgatgcacccgctgctcccagcagcgccgctgcgcccgcacca
agcccccgcgcagtgaccgacacggacagcgctgcgctgcctgcggcggcccctgtgccc
gcgccagcgccagcggtcgctcccacctcaactgccaccgtcgccaccgagcagcagccc
agcgcccaggccagcaccccctacgtgctgccgctgaccgagctcgaagcgctggccagc
caagtgggcttgcaatgggtgcagtccgacgccgcccgcgtcgagcaggcccgcgccgcc
agcgcggcccaagcgccagcgccgcatgcgccgcgccagcccaagccggttcaaatgccc
ggcgatggcccgttggtgctggtcgaaacccgccgcgacctgcgccaactgaacttttaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (95)   
   KEGG ORTHOLOGY (1)   
   RefGene (92)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (107)   

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