KEGG   Berryella intestinalis: JI75_02790
Entry
JI75_02790        CDS       T03545                                 
Name
(GenBank) hypothetical protein
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:3.6.4.13]
Organism
cbac  Berryella intestinalis
Pathway
cbac03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cbac00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    JI75_02790
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cbac03019]
    JI75_02790
Messenger RNA biogenesis [BR:cbac03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     JI75_02790
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 AAA_30 AAA_22 Shikimate_DH
Other DBs
NCBI-ProteinID: AJC11752
UniProt: A0A0A8B9D7
Position
complement(624657..626339)
AA seq 560 aa
MTNGFKELGLSEAALKAVDALKYTDPTPVQEQAIPTILDGRDVCAAAATGTGKTAAFLLP
TMSKLAKSKRGCGPRMLVVTPTRELAQQIGDVCFTISRHTKHFQCTVYGGTKYGPQISKL
KRGVDILIATPGRLNDLRERGVVNLRDIDVLVIDEADRMLDMGFWPSMESIIAETPSTRQ
TLLFSATLDKKVLRSVAPILNNPATVEIAHHGETAKSVDQFIMPIEHRKKQDLLQAVLDE
KGFDRVIVFTRTKNRAEECMEQLRDADYAAESIHSDKSQFKRRRALENFAKGKTNILVAT
DVLARGIDVPSVSYVVNYDLPDMAEDYVHRIGRTGRAGEVGYAISFVSRESRNGLKDIER
LIDREIPMMDLESYDLDPTLLSAKSKKAKKKPARARDIERARDFKQNGGKSASADRPFKG
IPRPARKGAKADDQRRGESGGHRKKEGSQRFNRDFEPKDARRAGRSERSESRVRRAPGTG
EGWKGTRGKKNAYGFDIEGGRNGARSGHGERSFAAERPNRNRRSEHGFDGRGKASKKRPE
AVEASVDGGFYSKVAKKGRR
NT seq 1683 nt   +upstreamnt  +downstreamnt
atgaccaacggattcaaagaactcggcctttccgaagcggcgctcaaggcggtcgacgcg
ctgaagtacaccgaccccacgcccgtacaggagcaggccatccccaccatcctcgacgga
agggacgtctgcgccgccgcggccaccggcacgggcaaaaccgccgccttcctgctgccc
accatgagcaagctggccaaatcgaagcgcggctgcggcccccgcatgctggtggtcacc
cccacgcgcgaactggcccagcagatcggcgatgtgtgcttcaccatcagccgccacacc
aagcacttccagtgcaccgtgtacggcggcacgaagtacggcccccagatctcaaagctc
aagcgcggcgtcgacatcctcatcgccacccccggccgcctgaacgacctgcgcgagcgc
ggcgtcgtgaacctgcgcgacatcgacgtgctcgtcatcgacgaggccgaccgcatgctc
gacatgggattctggccctccatggagtcgatcatcgccgaaaccccctccacgcgccag
accctgctgttctccgcaacgctcgacaaaaaggtgctgcgcagcgtcgcccccatcctg
aacaaccccgcaacggtggagatagcccatcacggcgagaccgccaagtcggtcgaccag
ttcatcatgcccatcgagcaccgcaagaagcaagacctcctgcaggccgttttggacgag
aagggcttcgaccgcgtcatcgtgttcacccgcaccaagaaccgcgccgaggaatgcatg
gagcagctgcgcgatgccgactacgccgccgagtccattcactccgataagtcccagttc
aagcgccgccgcgccctcgagaacttcgccaagggcaagacgaacatcctcgtagccacc
gacgtgctggcccgcggcatcgacgtgcccagcgtcagctacgtggtgaactacgacctg
cccgacatggccgaagactacgtgcaccgcatcgggcgcaccggtcgcgcgggcgaggtg
ggctacgccatctcgttcgtcagccgcgagagccgcaacggcctgaaggacatcgagcgc
ctgatcgaccgcgagatccccatgatggacctcgaaagctacgatctggatcccacgctt
ttgtcggccaagagcaagaaggccaagaagaagccggcccgcgcacgcgacatcgagcgc
gcccgcgacttcaagcaaaacggcggtaagagcgcctctgccgaccgcccattcaagggc
atcccccgacccgcccgcaagggcgccaaggcggacgatcagcgccgaggcgagtcgggc
ggccaccgcaagaaggaaggctcgcagcggttcaaccgcgacttcgagcccaaagacgcc
cgccgcgccggccgctcggagcgcagtgagagccgcgtgaggcgcgcgcccggcaccggc
gagggatggaagggcacccgcggcaagaagaacgcctacgggttcgacatcgagggcggc
cgcaacggcgcgcgctccggccacggcgagcgcagcttcgcagcagagcgccccaaccgc
aaccgccgcagcgagcacggcttcgacgggcggggcaaggcctccaagaagcgccccgaa
gccgtggaggcgtcggtagacggcggcttctacagcaaggtcgccaagaagggtcgccgc
taa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (11)   
   KEGG ORTHOLOGY (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (24)   

Download RDF
DBGET integrated database retrieval system