KEGG   Clostridium botulinum A Hall: CLC_2638
Entry
CLC_2638          CDS       T00575                                 
Symbol
recJ
Name
(RefSeq) single-stranded-DNA-specific exonuclease RecJ
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
cbh  Clostridium botulinum A Hall
Pathway
cbh03410  Base excision repair
cbh03430  Mismatch repair
cbh03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:cbh00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    CLC_2638 (recJ)
   03430 Mismatch repair
    CLC_2638 (recJ)
   03440 Homologous recombination
    CLC_2638 (recJ)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cbh03400]
    CLC_2638 (recJ)
DNA repair and recombination proteins [BR:cbh03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     CLC_2638 (recJ)
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     CLC_2638 (recJ)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      CLC_2638 (recJ)
SSDB
Motif
Pfam: DHH RecJ_OB DHHA1 HTH_24 F_bP_aldolase CobA_CobO_BtuR
Other DBs
NCBI-GeneID: 5398661
NCBI-ProteinID: YP_001388476
UniProt: A5I5J8
Position
complement(2768937..2770718)
AA seq 593 aa
MNKKWMLRRNKLNIRDIANKSGISETLCTVLVNREIYNLEDIKDFLEPSLEKLYNPLLMK
DMDKGTEIIKRSIIDKKKIAIYGDYDADGVTSTVILYIALKECEANVIYYIPDRETEGYG
MCTERVERLKAEGVEVIITCDNGIAALEQVERAKELGMTVVITDHHELPFIENEKEEREY
VVPKADAIINPKQKDCYYPFKMLCGAGIAFKFSKLLYEKLNMNPNKYKELLQFAAIGTIC
DVVDLKGENRIIAKLGLESINNTNNLGLRALIKETSLNEKNITSYNVGFIIGPCINATGR
LDTAALSVELFLAKDIKRAEKLAKELRNLNTERQEITMVGVEEITYAIENSSLKNDKVLV
IYKENIHESIAGIVSGRIKDAYNRPTIVLTKGKEMPKGSGRSIDGYNLFEELMKCKEYIY
KFGGHPMAAGLTIEEKNINKLREELNKNCNLKDEDFIPKIRIDKRLALKEVNLELIDSLQ
CLEPFGKGNSSPILAEKNIKIEGIRILGKDQNTLKLTCRVEDTNKRIHAIAFGKVDEFKR
DLENIYEDENVENIITNPLMAGLKLDLIYYPMINEYNGNVYTQLRIIDYRINR
NT seq 1782 nt   +upstreamnt  +downstreamnt
ttgaataaaaagtggatgttaagaagaaataaattgaatataagagatatagctaataaa
tcaggaataagtgagaccttatgtactgtattagttaatagagaaatatataacttagaa
gatataaaggattttttagagccttctttagaaaaactttataatcctttattgatgaaa
gatatggacaaaggtacagaaataataaaaaggtcaataatagataaaaagaaaatagct
atttatggagattatgatgcagatggggttactagcaccgtaatattatatatagcttta
aaagaatgcgaagctaatgtgatttattatataccagatagagaaacagaagggtacggt
atgtgtacagaaagagttgaaagattaaaagcagagggcgtagaggttataattacttgt
gataatggtatagctgcgttagagcaagtagaacgagcaaaagaattaggtatgacggtg
gtaattacagaccatcatgaattaccttttatagaaaatgaaaaggaagaaagagaatat
gtagtaccaaaagcagatgctataataaatccaaaacaaaaggattgttattatcccttt
aaaatgctttgtggagcaggtatagcttttaagttttcaaaacttttatatgaaaaatta
aatatgaatcctaataaatataaagaattattacaatttgcagctataggaacaatatgt
gatgtagtagatttaaagggtgaaaatagaataatagctaaattgggattagaaagtata
aataacacaaataatctaggcttgagagcacttataaaagagacttcattaaatgagaaa
aatataacttcttataatgtaggatttataataggaccttgcataaatgctacaggaaga
ttagatacagcggctctttctgtggaactgtttttggctaaagatataaaaagggcagaa
aaactagcaaaagaattaagaaacttaaatactgagagacaagaaataacgatggtaggt
gtagaagaaataacatatgccatagagaattcatcattaaaaaatgataaagtgttagtc
atttataaagaaaatatacatgaaagtatagcgggtatagtatcaggaagaataaaggat
gcatataatcgaccaacaatagttttaactaaaggcaaagaaatgcctaaaggatctgga
agatctatagatggatataatctttttgaagaacttatgaaatgcaaggaatacatatat
aaatttgggggtcatccaatggctgctggtcttactatagaagaaaaaaacataaataaa
ctaagagaagaattaaataaaaattgcaatttaaaagatgaagactttatacctaaaata
agaatagataagagattagctctaaaagaagtgaacttagagctaatagatagcctacag
tgtttagaaccttttggtaaaggaaatagttcaccaatactagcagaaaaaaatataaaa
atagaaggaataagaatattaggtaaagatcaaaacacattaaaattaacttgtagagta
gaagatacaaataaaagaatacatgcaatagcctttggaaaagtggatgaatttaaaaga
gatttagaaaatatatatgaagatgaaaatgtggaaaatattataactaacccacttatg
gcaggtttaaaattagatttaatatattatccaatgattaatgagtataatggaaacgtg
tatactcaattaagaataatagattacagaataaatagataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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