KEGG   Clostridium botulinum Ba4: CLJ_B1975
Entry
CLJ_B1975         CDS       T00895                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
cbi  Clostridium botulinum Ba4
Pathway
cbi02024  Quorum sensing
cbi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cbi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CLJ_B1975 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    CLJ_B1975 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cbi03019]
    CLJ_B1975 (hfq)
   03036 Chromosome and associated proteins [BR:cbi03036]
    CLJ_B1975 (hfq)
Messenger RNA biogenesis [BR:cbi03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     CLJ_B1975 (hfq)
Chromosome and associated proteins [BR:cbi03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    CLJ_B1975 (hfq)
SSDB
Motif
Pfam: Hfq LSM
Other DBs
NCBI-ProteinID: ACQ53749
UniProt: C3KX32
Position
complement(1957287..1957544)
AA seq 85 aa
MTKVVNNLQDIFLNGARKNRIPVTIYLTNGFQLKGFVKGFDNFTVILDSDGKQMMIYKHA
ISTINPAKPLLFVQNPNGDDYKDKE
NT seq 258 nt   +upstreamnt  +downstreamnt
atgactaaagttgttaataatctacaagatatatttttaaatggtgctagaaaaaataga
attcctgttaccatatatttaacaaatggatttcaattaaagggatttgttaaaggattt
gataactttacagtaatattagattcagatggcaaacaaatgatgatatacaaacatgct
atatctacaattaatccagcaaaacccttgctatttgtacaaaatcctaacggagatgat
tataaagataaagaatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (2)   
   Pfam (2)   
All databases (13)   

Download RDF
DBGET integrated database retrieval system