KEGG   Clostridium botulinum A3 Loch Maree: CLK_2895
Entry
CLK_2895          CDS       T00670                                 
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase, alpha subunit
  KO
K03040  DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
Organism
cbl  Clostridium botulinum A3 Loch Maree
Pathway
cbl03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:cbl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CLK_2895 (rpoA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cbl03021]
    CLK_2895 (rpoA)
   03400 DNA repair and recombination proteins [BR:cbl03400]
    CLK_2895 (rpoA)
Enzymes [BR:cbl01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     CLK_2895 (rpoA)
Transcription machinery [BR:cbl03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     CLK_2895 (rpoA)
DNA repair and recombination proteins [BR:cbl03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      CLK_2895 (rpoA)
SSDB
Motif
Pfam: RNA_pol_A_bac RNA_pol_A_CTD RNA_pol_L HHH_5 DUF211 RAD51D_N
Other DBs
NCBI-ProteinID: ACA55587
UniProt: B1KSJ6
Position
complement(3792975..3793922)
AA seq 315 aa
MLEIEKPKIECVENAEDGSYGKFVIEPLERGYGITLGNALRRILLSSLPGVAADHIKIDS
VLHEFSTVQGVKEDVTELILNIKCLALTMNGEGPKTIYIDEVGPKEVTAADIKTDGDVEV
INKDLHIATLDENGKMYMEINVNRGRGYVTQNKNKTKDMPIGSIAVDSIYTPVKRVNFSV
ENTRVGQITDYDKLTIEVWTNGTIRPEEAVSLSAKILIEHFKLFMTLTDHADDMEIMVEK
EEDKKEKVLEMTIEELDLSVRSYNCLKRAGINTVQELCERSMDDMMKVRNLGKKSLEEVE
QKLEALGLGLRKSED
NT seq 948 nt   +upstreamnt  +downstreamnt
atgttagaaatagaaaagccaaaaatagaatgtgttgaaaatgctgaagatggttcttat
ggtaaatttgtcattgaaccattagaaagaggttatggaataactcttggtaatgctttg
agaagaattcttttatcatcattacctggagttgctgcagaccatataaagattgacagt
gttcttcatgagttttcaacagtacaaggtgtaaaagaggatgttacagaattaattctt
aacatcaaatgtttagcacttactatgaatggagaaggtccaaaaactatatatatagat
gaagtaggacctaaagaagttacagcagctgatatcaaaacagacggagatgttgaagta
ataaacaaagatttacatatagcaacccttgacgaaaatggtaaaatgtatatggaaatc
aacgttaatcgtggtaggggctatgtaactcaaaacaaaaacaaaactaaggatatgcca
ataggaagtatagcagtagattcaatttatacacctgttaaaagagttaacttttccgtt
gaaaatactagagttggtcaaataacagactatgataaattgactatagaagtttggact
aatggaactataagaccagaagaagctgtaagtttatcagctaaaatccttatagaacac
tttaagttatttatgactttaactgaccatgcagatgatatggaaatcatggttgaaaaa
gaagaagataagaaagaaaaggttctagaaatgacaattgaagaactagatctttcagtt
agaagttataactgcttaaaaagagctggaataaatacagttcaagaactatgcgaaaga
agcatggatgacatgatgaaagttagaaaccttggtaaaaaatccttagaagaagtagaa
caaaagttagaagctttaggattaggcttaagaaaaagtgaagattag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (6)   
   Pfam (6)   
All databases (18)   

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