KEGG   Candidatus Viadribacter manganicus: ATE48_11890
Entry
ATE48_11890       CDS       T04422                                 
Name
(GenBank) hypothetical protein
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
cbot  Candidatus Viadribacter manganicus
Pathway
cbot03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:cbot00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    ATE48_11890
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cbot03400]
    ATE48_11890
Enzymes [BR:cbot01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     ATE48_11890
DNA repair and recombination proteins [BR:cbot03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     ATE48_11890
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_primase_S
Other DBs
NCBI-ProteinID: ANP46568
UniProt: A0A1B1AJ26
Position
complement(2309759..2312239)
AA seq 826 aa
MKRPAKAGGGKKTAKSDAVGGLAEYNRKRDFKKTTEPAGGVVKDAGGMFVVQKHAATRLH
YDFRLEHDGVLMSWAVPQGPSLDPAIKRLAMRTENHPIEYGSFEGVIPKGEYGAGAVIIW
DTGKVKWLLDPDEGMAKGELKFVLAGDRLMGEFHMVKIKPREGERGNPWLLFKSKDAFAG
KEDPVARSVTSVVSGRTIEDVRSGGARVWSKGGERAPKAVKPPKWAFVEPALATRVDDAP
KGDAWIHEIKYDGYRIQAAVSGDSVRLYTRTGLDWTGKFQSIADALAASKLKDILIDGEV
AVAQAGGKTDFSALQKSLENGVAKGVSYFVFDLLAEGAKDLRKTPLIDRKLRLERILAKA
KPPIRISPYFEGGGPDVLEAFRDQGLEGIVSKKATSTYQSGRTNSWLKAKCVNEQEFVII
GYQPSLKGRAFAALMMADHVDGELVYRGNVGTGFDDKTLASLHAQLSKMERAKPALTVPR
AAAKGAKWVEPKLVAQVRFAEFTSEGAIRHGVYLGLRGDKAAKDVQPEQAVPAMRTRVRL
THPGKVLFPDAGVTKAELAAYLDMAADRMGAHLFGRPVSLVRAPDGVGGQTFFQKHAMKG
MPAEIKLIKVSESDGEAEEYITFPDATAIVSAAQISTLEFHLWGSRNKDLERPDRLIFDL
DPDEDLDFQVVKRAAFDIRALLDSADLQSFAMITGGKGIHIVLNVKPKLAWEELKAFSSD
VAEQIAALDPKRFVANMAKAKRKGRIFVDYLRNGRGATAIAPYSPRASGTAPIAVPVSWD
ELKTIPAASVFKLKDMHARLSQPDPWADYAKSAVSITATTRRKLGL
NT seq 2481 nt   +upstreamnt  +downstreamnt
atgaaacggcccgccaaagctggcggcgggaagaaaacggccaagtcggacgcggtcggc
ggtctggccgaatacaaccgcaagcgcgatttcaaaaagacgactgaacccgccggcggc
gtcgtaaaggacgcgggcggcatgttcgttgtgcaaaagcatgcggcgacacggctgcac
tacgacttccgacttgagcatgatggcgtgctgatgagctgggctgtgccgcaaggcccc
tcgctcgaccccgccatcaagcgcctcgccatgcgcaccgaaaatcaccccatcgaatac
ggatcgttcgagggcgtcattccgaagggtgaatatggcgcgggcgcggtgatcatctgg
gacaccggcaaagtaaaatggctgctcgatccagatgaaggcatggcgaagggtgaattg
aaattcgtgttggccggcgatcggctgatgggtgaatttcacatggtcaaaatcaagccg
cgcgagggtgagcgcggcaatccgtggctattgttcaaatcgaaggacgccttcgccggc
aaggaagatccggttgcgcgcagcgtcaccagcgttgtctccggccgcacgatcgaagac
gtgcgatcaggcggcgcgcgcgtgtggagcaaaggcggcgagcgagcgccgaaagcggta
aagccgccaaaatgggcgtttgtggaaccggccttggcgacacgcgtggacgacgcaccc
aagggcgatgcctggattcacgagatcaagtatgacggttatcgcatccaggcagccgtg
agcggcgacagcgtgcggctttacacgcgcacgggactggattggaccggcaaatttcag
tccatcgccgatgcactcgcggcgtcaaagctgaaagacatcctgatcgatggtgaagtc
gccgttgcgcaagccggcggcaagacggacttctccgcactgcaaaaatcactcgaaaac
ggcgtcgccaaaggcgtttcgtatttcgtgttcgatctcttggcggaaggcgcaaaagat
ctccgcaagacgccactgatcgatcgcaaactgaggctggaaagaatccttgccaaggca
aaaccgccgatacgcatcagcccttatttcgaaggcggtggcccagacgtcctggaggcg
tttcgcgatcaaggactggaaggaattgtttcgaaaaaggcgacgtccacttatcaaagc
ggacgcaccaattcttggctcaaggcaaaatgcgtcaacgagcaggaattcgtcattatc
ggttatcagccctccctcaagggacgcgccttcgcagcgctgatgatggccgatcatgtg
gacggcgagctggtctatcgcggcaatgttggcactggcttcgacgataagacactcgcc
tccctccacgcgcagctgagcaagatggagcgcgcgaaaccagcgctgactgtgccgcgc
gcggcagcgaaaggcgcgaagtgggttgagccaaagctcgtggcgcaagtgcggttcgcg
gaatttacaagtgaaggcgcaatccgccacggcgtttacctcggactgcgcggcgacaag
gccgcgaaggatgtgcagcccgaacaggcagttccggcgatgcgcacgcgcgtcaggctc
acgcatccagggaaggtattgtttcccgacgccggcgtcaccaaggccgaactcgccgcc
tatctcgacatggccgcagatcggatgggcgcgcacttgttcgggcgaccagtcagtctc
gtgcgcgcgccggatggcgttggcggacagacattcttccagaagcacgcaatgaagggc
atgcccgcggaaatcaaacttatcaaagtgtctgaaagtgacggcgaggccgaagaatac
attacatttccggacgccaccgcgatcgtttctgctgctcagatcagcacgcttgagttt
catctctggggctcacgcaacaaagatctggagcgccccgaccgcctcatcttcgatctc
gatcctgacgaagacctcgactttcaagtggtaaaacgcgccgcgttcgacatcagagct
ctgctcgacagcgccgacctccagtcgttcgcgatgatcaccggcggcaagggcattcac
atcgtgctcaatgtgaagcccaaactggcgtgggaggaattgaaagccttctcctccgat
gtcgctgaacaaatcgccgcgctcgatcccaagcgcttcgtcgccaacatggcgaaggcg
aagcgcaaaggccgcatcttcgtcgactatttgcgcaacgggcgcggcgcgacggctatc
gctccatattcgccgcgcgcgagcggaacagcgccaatcgccgtgcccgtgagctgggat
gagctgaagacgattcctgcagcgtcggttttcaaactgaaagacatgcacgcgcgtctg
agccagccagatccatgggcagattacgccaagagcgccgtcagcatcacggccacgaca
cggcgaaaattggggctctga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (13)   
   KEGG ORTHOLOGY (1)   
   RefGene (10)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (32)   

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