KEGG T01054: CBG13719

Caenorhabditis briggsae: CBG13719

Entry

CBG13719 CDS T01054

Definition

Hypothetical protein CBG13719

Orthology

K03144

transcription initiation factor TFIIH subunit 4

Organism

cbr Caenorhabditis briggsae

Pathway

cbr03022	Basal transcription factors
cbr03420	Nucleotide excision repair

Module

cbr_M00290

Holo-TFIIH complex

Class

Genetic Information Processing; Transcription; Basal transcription factors [PATH:cbr03022]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:cbr03420]

SSDB

Motif

Pfam:

Tfb2 Helicase_C_3

Other DBs

NCBI-GI:

NCBI-GeneID:

WormBase:

UniProt:

Position

AA seq 482 aa
MSASSSSAPSEAPANTTGVSSSRHSCLFLDFLMSIKPKDRQRMLQKPSCSFFIYRMLPAI
AQQVTIQLIWKGSFPKADDVELTKSIEEQVELLLKLGIAHKATDGKLTIDNDYKRSYMYA
AMLGAASISSLVLETNDEKRRGKDVEKKAVERWDCILRYLALPSEENTEAVSDTTKDLFR
KANFTSGESRIEITTFGFQFLLLSPVKQMWTYVIEYLKLEISKGNDIVEVIEPLIQIVLL
ANRGFKAEKECYQIDEQWTQPQHDLLNHLRELGVIFIRKRKDGVFFLTHLLTHLATNETI
DDTSSEKASNGKVIVETNFRVYAYTSSLLQLAIIALFTEMTYRFTDMSVGMITRESVRGA
LQHGITAAQIISFLRANAHPQCVATSGPVNCLPITVADQIRLWEDERRRMDLKDAYIYSH
FESDDEYHGVVRYAQERGILLWANPQQKLVIVNEEGHEAVRQWYKRSKGASGDSGGPSTS
SA

NT seq 1449 nt +upstreamnt +downstreamnt
atgtccgcatcgtcaagctccgccccttcggaggcgccagccaacacgactggcgtgagc
tcatccagacattcgtgtctttttttggactttttgatgtcaattaagccgaaagatcga
caacggatgctccagaaaccgtcttgctcattcttcatctaccgtatgcttccggcgatt
gctcagcaagtcacgattcagctcatttggaaaggcagttttccaaaagccgacgatgtg
gaattgacaaaatcgattgaggaacaagtcgagctgctcctgaaactgggaattgctcat
aaggcaacagatggaaaattgacaattgataacgactacaaacgatcgtatatgtacgcg
gcgatgctcggcgcggcgagcatttcgagcctcgttttggagacgaacgacgagaaacga
cgtggaaaagatgtcgaaaaaaaggcggtcgagagatgggactgcattttgagatatctc
gctctcccgtccgaagagaacaccgaagccgtctcagacaccaccaaggacctattccga
aaagccaacttcaccagcggcgagtctcgaatcgaaatcaccacatttggtttccaattt
ctattgctcagcccagtgaaacaaatgtggacgtacgtcatagaatacctgaaattggag
atctccaaaggaaacgacatcgttgaagtcatcgaaccactcattcaaattgtgctccta
gccaatagaggattcaaagcggaaaaagagtgttatcagattgatgagcaatggacacaa
ccgcaacacgaccttctgaatcatctaagagaattgggggtcattttcattcggaaacga
aaagacggtgtctttttcttgacacaccttctaacccatttggcaaccaacgagactatt
gacgacacgtcatctgagaaggcgtcgaatggaaaagtgattgtggagacgaatttcagg
gtttacgcgtatacgtcgtcgcttttgcagctggcgattatcgcgcttttcacggaaatg
acgtatagattcacggacatgtccgtcggcatgatcacccgcgaatcggtccgtggagcc
cttcaacacggcatcaccgccgcccaaatcatctcattcctccgtgccaacgcccatcca
cagtgtgtcgccacatcggggcccgtcaattgtttgccgattacggtcgccgatcaaatc
cgcttgtgggaagacgaacgtcgtcgtatggacctgaaggacgcctacatctattcgcac
tttgaatccgacgacgagtatcacggcgtcgtcagatacgctcaagagcgtggaattctg
ctctgggcgaatccccaacagaagttggtcattgtgaatgaggagggacatgaagccgtt
cgacagtggtacaagagaagcaaaggagccagtggagattctggaggaccatcaacgtct
tctgcataa

All links

Pathway (3)   
   KEGG PATHWAY (2)   
   KEGG MODULE (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
   WORMBASE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (14)   

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