KEGG T01054: CBG21228

Caenorhabditis briggsae: CBG21228

Entry

CBG21228 CDS T01054

Definition

Hypothetical protein CBG21228

Orthology

K12828

splicing factor 3B subunit 1

Organism

cbr Caenorhabditis briggsae

Pathway

cbr03040

Spliceosome

Class

Genetic Information Processing; Transcription; Spliceosome [PATH:cbr03040]

SSDB

Motif

Pfam:

SF3b1 HEAT_2 HEAT HEAT_EZ Vac14_Fab1_bd MMS19_C Adaptin_N UNC45-central DUF3677

Other DBs

NCBI-GI:

268575700

NCBI-GeneID:

8584823

WormBase:

CBG21228

Position

III

AA seq 1267 aa
MSRSGEAYAQELNRKRAAAQRAAANEDNDENQGNGNKVAFGAAGNFDTDVYGSVRGESRD
GYLDSIGTGEEDDVDEDSMPTVQKKATNYSQPHKFIEEVAAASEDTDPFADTRTKTIAER
QSKYHERAMRRQISPDRADAFVDQTPDNRNRGYAEVMRDQRYHEEKGRVERELADRAKAG
ELHVTREPEKKKGRWDATEAPESSENLGAASATPSQGSAPRKRLGFASLSAEAATPRAAR
WDETPAHSTGAADATPSIDKWSSTPAAQTPRRNRWDETPKADLNDGSMTPGWGMETPARG
ASDDVKIEDTPSASKRRSRWDLTPSQTPNVAAATPLHAGAQTPSFTPSHPSQTPIGAMTP
GGATPIGTAAMGMKTPAPHMIPMTPEQMQIYRWEKEIDDRNRPLTDEELESLFPPGYKVL
VPPMNYIPLRTPSRKLMATPTPMGGAGAGGFYMPGTPDRDGVGEKGVGGLVDTQPKNAEL
PPLKPDDMQYFDKLLMDVDESSLSREEKNEREIMEHLLKIKNGTPPMRKSGLRKITENAR
KYGAGPLFNQILPLLMSPSLEDQERHLMVKVIDRILYKLDDLVRPYVRNTTARAFAVVAS
ALGIPALLPFLKAVCKSKKSWQARHTGIKIVQQMAILMGCAVLPHLKALVEIVKDGLDDE
QQKVRTITALCLAALAEASAPYGIEAFDSVLKPLWKGIRMHRGKGLAAFLKAIGYLIPLM
DAEYASYYTREVMLILIREFASPDEEMKKIVLKVVKQCCATDGVEPSYIRDEVLPSFFKA
FWNQRMAMDRRNYRQLVDTTVEIAQKVGCVEMIARIVDDLKDENEQYRKMVMETIENIVA
LQGATDIDARLEEQLIDGLLYAFQEQTQEDSVMLDGFGTICSSLGRRAKAYIPQICGTIL
WRLNNKSAKVRQQAADLIARIAPVMHMCEEEKMMGHMGVVLYEYLGEEYPEVLGSILGAL
KAICNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGAIADRGSEFVSAREWMR
ICFELLELLKAHKKSIRRAAINTFGFIAKAIGPHDVLATLLNNLKVQERQLRVCTTVAIA
IVSETCAPFTVLPAIMNEYRVPEINVQNGVLKALSFMFEYIGEMAKDYIYAVVPLLIDAL
MERDQVHRQIAVDAVAHLAIGVYGFGCEDALIHLLNYVWPNMLENSPHLIQRWVFACEGM
RVSLGPIKVMQYCLQALWHPARKVREPVWKVFNNLILGSADALIAGYPRIENTPTNQYVR
YELDYVL

NT seq 3804 nt +upstreamnt +downstreamnt
atgtcgcgttccggcgaggcatacgctcaagagctcaaccgcaagcgtgccgctgctcag
cgtgccgccgccaacgaggacaacgatgagaaccaggggaatgggaataaagtggcgttt
ggggcagccggaaattttgatacagacgtctatggaagtgttcgtggcgagagccgtgat
gggtatctcgattcgatcggaactggagaagaagacgatgtggacgaggactcgatgcca
acagtacagaagaaggctaccaactactcccagccacacaaattcatcgaagaagtcgct
gcggcttcagaagacacggatccattcgctgacactcgcaccaagaccatcgcggagcgc
caatccaagtaccacgagcgagcgatgagaagacagatctcgccggatcgtgccgacgct
tttgttgatcaaacgccggacaaccgtaaccgcggctacgcggaagtgatgcgcgatcag
cgttatcacgaggagaagggtcgtgtcgagagagagctcgcggatcgagccaaagccgga
gagctccacgtcacccgggagccagagaagaagaaaggccgttgggatgccacagaagcg
ccagaatcctccgagaacctcggagccgcatcagctacaccgtcccaaggatccgcgcca
cgcaaacgtctcggattcgcgagtctgagtgccgaggcggcgactccaagagcagctcgc
tgggatgagacgccagctcactccactggagccgccgatgcgacgccttctatcgataag
tggtcatcgacgccagctgctcagactccaagacgaaatcgatgggatgagacgccgaaa
gccgatttgaacgatggatcaatgacacctggatggggaatggagacaccggcacgtggt
gcttccgatgatgttaagatcgaggacacaccatccgcctcaaaacgtcgttctcgctgg
gacctgacaccgtctcaaacgccaaacgtcgctgccgctacgccactccacgccggcgcc
caaaccccatcgttcactccaagccacccctcacagaccccgatcggagcaatgacacca
ggaggagcaacgccaatcggaactgcagcaatgggcatgaagacgccagcgccccatatg
ataccgatgacacccgaacaaatgcaaatttatcgttgggagaaggagattgacgatcgg
aatcgaccattgaccgatgaggagctggaatcgttgttcccgcccggatacaaggttctc
gtgcccccaatgaactatattccgttgagaaccccatctcgcaaactaatggccacgcca
acaccaatgggcggcgccggcgctggtggattctacatgccaggcactccggatcgtgac
ggtgtcggagagaagggcgtgggtggcctagtcgacactcaaccgaaaaacgccgaactt
ccacctctgaaacccgacgatatgcagtatttcgacaaacttctgatggatgtggacgag
tcttcgttgagccgagaggagaagaacgagagggagatcatggagcatctgctgaagatc
aagaacggaacaccgccgatgaggaagtcgggacttcgaaagatcacagaaaacgccaga
aagtacggtgctggaccccttttcaatcagattcttccactcctgatgtcaccgtcgttg
gaggatcaagaacgacatctgatggtgaaggttatcgatcgaattctgtacaaactggat
gacctggttcgcccatacgtccgtaacaccacggctcgtgcgttcgccgtcgtcgcctcc
gctctgggtattccagcacttctcccattcctcaaagccgtctgtaagagtaagaagtcg
tggcaagcacgtcacaccggaatcaagattgttcagcagatggcgattctgatgggatgc
gccgttttgccgcatctgaaggcgttggtggagattgtgaaggatggtttggatgatgag
caacaaaaggtccgtacaatcactgctctctgcttggcggcgctcgccgaagcatccgct
ccatacggaatcgaagccttcgactctgtgctcaaacctctgtggaaaggaatccgaatg
catcgtggaaagggtctcgccgcgtttctcaaggccattggctacctgattccgttgatg
gacgccgagtacgcctcctactatacccgtgaagtcatgttgattttgattcgagaattc
gcgtcgcccgatgaggaaatgaagaaaatcgtgctgaaagtggtgaaacagtgctgcgcg
acagatggtgtcgagccgagttatattcgcgatgaggtgcttccaagcttcttcaaagcc
ttctggaatcaacgaatggcaatggatcggagaaactatcgacagttggtggacaccact
gtcgaaatcgctcaaaaagtcggatgtgtggagatgatcgcgagaattgtggacgatttg
aaggatgagaatgagcaataccggaaaatggtcatggagacgattgagaatatcgtggcg
ttgcaaggagccacagatattgatgctcggctcgaagaacagctcattgatgggctcctc
tacgcattccaggagcaaactcaggaggattctgtcatgcttgatggatttggaacgatt
tgctcgagtttgggcagaagagccaaggcatatatccctcagatttgcggtaccattctg
tggagattgaataacaaatcggcgaaggtccgtcaacaagcggccgacctcatcgcccgt
atcgcccccgtaatgcatatgtgtgaagaggagaagatgatgggacacatgggagtcgtt
ctctacgaatatctgggagaagagtatccagaagtgctcggctcgattctcggagccctg
aaagccatttgcaacgtgattggaatgactaaaatgacaccaccaatcaaggatctgctc
cctagactcactccgatcctcaagaatcggcatgagaaagtgcaggagaattgtatcgat
ctggttggagccatcgctgacagaggatcggaattcgtgtcggccagagaatggatgaga
atctgtttcgagttgttggagctgctcaaggctcacaagaagtccatcagaagagctgcc
atcaatacgtttggcttcattgcgaaggcgattggaccgcatgatgtgctcgccacgttg
ctcaataatttgaaggtccaagaacgtcaactccgtgtgtgcaccaccgtggccatcgct
atcgtctctgagacgtgcgccccattcacagtacttccagcaatcatgaacgagtaccgt
gtcccagagatcaacgtccagaatggagttctaaaagcgctgagcttcatgttcgaatac
attggagaaatggccaaagactacatctacgcagtggttccattgctcatcgacgccctc
atggagagggatcaggtgcatcgtcagatcgccgtcgacgctgttgctcatttggcaatc
ggagtttatggtttcggttgtgaggatgctcttatccatttgctcaattatgtatggccg
aatatgttggagaactcgccgcatttgattcagagatgggtgttcgcgtgtgagggaatg
agagtctcgttgggaccgattaaggtaatgcaatactgtctccaagccttgtggcatcca
gcgagaaaggtccgtgagcccgtctggaaggtgttcaacaatctgattttgggatcagcc
gacgcactgatcgccggatatccacgtatcgaaaacacgcccaccaatcaatacgttcga
tatgaactggattatgtcctctaa

All links

Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
   WORMBASE (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (9)   
   Pfam (9)   
All databases (18)   

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